Re: [Libmesh-users] symbolic link error on "make" libmesh-0.9.3

2014-08-15 Thread Roy Stogner
On Thu, 14 Aug 2014, walter kou wrote: > 1) When should I re-run bootstrap? > > 2) I only do: configure, then make, then make install > I assume you want me to do "find -name Makefile.am | xargs perl -pi -e > 's/\$\(LN_S\)/\$\(LN_S\) -f/g' " before the "configure", right? Yes; find command fir

Re: [Libmesh-users] symbolic link error on "make" libmesh-0.9.3

2014-08-14 Thread walter kou
1) When should I re-run bootstrap? 2) I only do: configure, then make, then make install I assume you want me to do "find -name Makefile.am | xargs perl -pi -e 's/\$\(LN_S\)/\$\(LN_S\) -f/g' " before the "configure", right? On Thu, Aug 14, 2014 at 5:06 PM, Roy Stogner wrote: > > On Thu, 14 Au

Re: [Libmesh-users] symbolic link error on "make" libmesh-0.9.3

2014-08-14 Thread Roy Stogner
On Thu, 14 Aug 2014, walter kou wrote: > What are you exactly suggesting on the fix? I'm tempted to just run: find -name Makefile.am | xargs perl -pi -e 's/\$\(LN_S\)/\$\(LN_S\) -f/g' and do forced linking everywhere. It worries me to make such an intrusive change when I can't replicate the p

Re: [Libmesh-users] symbolic link error on "make" libmesh-0.9.3

2014-08-14 Thread walter kou
Hi John, What are you exactly suggesting on the fix? Thanks, On Tue, Aug 12, 2014 at 9:19 AM, John Peterson wrote: > On Mon, Aug 11, 2014 at 9:25 PM, Roy Stogner > wrote: > > > > I'm not sure what the best fix is on our end. Anyone know if it's > > portable to just tack "-f" onto whatever A

Re: [Libmesh-users] symbolic link error on "make" libmesh-0.9.3

2014-08-12 Thread John Peterson
On Mon, Aug 11, 2014 at 9:25 PM, Roy Stogner wrote: > > I'm not sure what the best fix is on our end. Anyone know if it's > portable to just tack "-f" onto whatever AC_PROG_LN_S provides, even > on systems where that's not simply "ln -s"? I bet it would work on all systems we care about or even

Re: [Libmesh-users] symbolic link error on "make" libmesh-0.9.3

2014-08-12 Thread walter kou
Thanks, the issue is solved. For the future reference, I put what I did as below: 1) configure ./configure 2) remove several files: rm ./examples/adaptivity/adaptivity_ex2/exact_solution.C rm ./examples/adaptivity/adaptivity_ex5/exact_solution.C rm ./examples/subdomains/subdomains_ex1/exact_sol

Re: [Libmesh-users] symbolic link error on "make" libmesh-0.9.3

2014-08-11 Thread Roy Stogner
On Mon, 11 Aug 2014, walter kou wrote: > I tried to build latest libmesh-0.9.3 on the super-computer. However, I > obtained error when doing "make", after some time. The error message is as > below: > > Making all in adaptivity/adaptivity_ex2 > make[2]: Entering directory > `/home/wkt699/SOFTWARE

[Libmesh-users] symbolic link error on "make" libmesh-0.9.3

2014-08-11 Thread walter kou
Hi all, I tried to build latest libmesh-0.9.3 on the super-computer. However, I obtained error when doing "make", after some time. The error message is as below: Making all in adaptivity/adaptivity_ex2 make[2]: Entering directory `/home/wkt699/SOFTWARES/LIBRARIESIBAMR_IBFE/LIBMESH-0.9.3/libmesh/e