I had a similar problem with my thesis which was written on Lyx 1.1.5fix2 under RH7.1, and editing it again under cygwin Lyx 1.2.1. You should just know that the way Lyx deals with figures has changed and that you have to manually adjust the figure settings so that they don't go outside the page. If you really want to go back to an older cygwin Lyx version, that may be the answer for you. I just bit the bullet and edited the figures and grumbled silently! ;)
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