Re: Knitr (Rnw) Rscript error log

On 10/1/12 12:15 AM, Yihui Xie wrote: > If you are using the German translation of the GUI, you can set the > interface language option to be Default in the preferences. Otherwise > you have to wait for LyX 2.0.5 for the bug fix. > My interpretation was wrong then. I thought the workaround was

Re: pdfTeX error: pdflatex (file bchr8a.pfb): cannot open Type 1 font file for rea

Aliabbas Petiwala wrote: Thanks Jurgen, it solved the problem by installing charter font which was not installed, but after importing coling2012.tex as shown below, i am getting errors(i have commented line :%\usepackage[utf8]{inputenc}): ! Package inputenc Error: Keyboard character used

Re: pdfTeX error: pdflatex (file bchr8a.pfb): cannot open Type 1 font file for rea

Thanks Jurgen after following your steps, now another error crops up: LaTeX Font Info: Font shape `MDA/mdbch/m/n' will be (Font) scaled to size 4.80003pt on input line 84. LaTeX Font Info: Font shape `MDB/mdbch/m/n' will be (Font) scaled to size 4.80003pt on input line 84. ! Package inputenc

Re: pdfTeX error: pdflatex (file bchr8a.pfb): cannot open Type 1 font file for rea

Aliabbas Petiwala wrote: Thanks Jurgen after following your steps, now another error crops up: LaTeX Font Info: Font shape `MDA/mdbch/m/n' will be (Font) scaled to size 4.80003pt on input line 84. LaTeX Font Info: Font shape `MDB/mdbch/m/n' will be (Font) scaled to size 4.80003pt

Re: pdfTeX error: pdflatex (file bchr8a.pfb): cannot open Type 1 font file for rea

I am getting the error in using the coling 2012 sty files at http://coling2012-iitb.org/doc/coling-latex.zip copying in the relevant miktex folder) On Mon, Oct 1, 2012 at 2:21 PM, Jürgen Spitzmüller sp...@lyx.org wrote: Aliabbas Petiwala wrote: Thanks Jurgen after following your steps, now

Re: pdfTeX error: pdflatex (file bchr8a.pfb): cannot open Type 1 font file for rea

Aliabbas Petiwala wrote: I am getting the error in using the coling 2012 sty files at http://coling2012-iitb.org/doc/coling-latex.zip copying in the relevant miktex folder) If you do not provide a minimal example file, I cannot help you further. (The coling2000.sty file itself looks innocent

Re: pdfTeX error: pdflatex (file bchr8a.pfb): cannot open Type 1 font file for rea

what i did is just import the coling tex file from that zip folder in lyx and i am getting those errors.Ya all the problems are in the tex file On Mon, Oct 1, 2012 at 5:16 PM, Jürgen Spitzmüller sp...@lyx.org wrote: Aliabbas Petiwala wrote: I am getting the error in using the coling 2012 sty

Re: pdfTeX error: pdflatex (file bchr8a.pfb): cannot open Type 1 font file for rea

Aliabbas Petiwala wrote: what i did is just import the coling tex file from that zip folder in lyx and i am getting those errors.Ya all the problems are in the tex file Then post this LyX file please, and also all the sty and TeX files. I'm willing to help, but I do not want to first download

Re: pdfTeX error: pdflatex (file bchr8a.pfb): cannot open Type 1 font file for rea

the error. HTH Jürgen

Re: pdfTeX error: pdflatex (file bchr8a.pfb): cannot open Type 1 font file for rea

on the inputenc call in order to determine the encoding of the latex file. If this line is missing, tex2lyx assumes the encoding is latin1. This happens in your case. The file, however, is encoded in utf8, and thus some glyphs are imported wrongly, which triggers the error. HTH Jürgen

Re: pdfTeX error: pdflatex (file bchr8a.pfb): cannot open Type 1 font file for rea

Aliabbas Petiwala wrote: wont it be possible to change the converter to not assume things and detect the encoding from the doc itself? I'm not very familiar with the tex2lyx internals, but I fear it's not easy to do that (this has already been considered). Jürgen

Re: Knitr (Rnw) Rscript error log

On 10/1/12 12:15 AM, Yihui Xie wrote: Wonderful. That is the root of the problem. The locale should not be C. This bug has been biting us: http://www.lyx.org/trac/ticket/7741 If you are using the German translation of the GUI, you can set the interface language option to be Default in the

Re: Knitr (Rnw) Rscript error log

Le 01/10/12 21:37, Michael Bach a écrit : On 10/1/12 12:15 AM, Yihui Xie wrote: I am using an American locale and GUI, so interface language default does not work. What do you mean exactly? Is it just that the US GUI is not convenient to you? You do not need the German UI to input German

Re: Knitr (Rnw) Rscript error log

That is something confused me as well. Here is a screenshot of what I was talking about: http://i.imgur.com/vkLhP.png It only sets the language of the GUI and will not affect the document itself. Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department

Re: pdfTeX error: pdflatex (file bchr8a.pfb): cannot open Type 1 font file for rea

Aliabbas Petiwala wrote: Thanks Jurgen, it solved the problem by installing charter font which was not installed, but after importing coling2012.tex as shown below, i am getting errors(i have commented line :%\usepackage[utf8]{inputenc}): ! Package inputenc Error: Keyboard character used

Re: pdfTeX error: pdflatex (file bchr8a.pfb): cannot open Type 1 font file for rea

Thanks Jurgen after following your steps, now another error crops up: LaTeX Font Info: Font shape `MDA/mdbch/m/n' will be (Font) scaled to size 4.80003pt on input line 84. LaTeX Font Info: Font shape `MDB/mdbch/m/n' will be (Font) scaled to size 4.80003pt on input line 84. ! Package inputenc

Re: pdfTeX error: pdflatex (file bchr8a.pfb): cannot open Type 1 font file for rea

Aliabbas Petiwala wrote: Thanks Jurgen after following your steps, now another error crops up: LaTeX Font Info: Font shape `MDA/mdbch/m/n' will be (Font) scaled to size 4.80003pt on input line 84. LaTeX Font Info: Font shape `MDB/mdbch/m/n' will be (Font) scaled to size 4.80003pt

Re: pdfTeX error: pdflatex (file bchr8a.pfb): cannot open Type 1 font file for rea

I am getting the error in using the coling 2012 sty files at http://coling2012-iitb.org/doc/coling-latex.zip copying in the relevant miktex folder) On Mon, Oct 1, 2012 at 2:21 PM, Jürgen Spitzmüller sp...@lyx.org wrote: Aliabbas Petiwala wrote: Thanks Jurgen after following your steps, now

Re: pdfTeX error: pdflatex (file bchr8a.pfb): cannot open Type 1 font file for rea

Aliabbas Petiwala wrote: I am getting the error in using the coling 2012 sty files at http://coling2012-iitb.org/doc/coling-latex.zip copying in the relevant miktex folder) If you do not provide a minimal example file, I cannot help you further. (The coling2000.sty file itself looks innocent

Re: pdfTeX error: pdflatex (file bchr8a.pfb): cannot open Type 1 font file for rea

what i did is just import the coling tex file from that zip folder in lyx and i am getting those errors.Ya all the problems are in the tex file On Mon, Oct 1, 2012 at 5:16 PM, Jürgen Spitzmüller sp...@lyx.org wrote: Aliabbas Petiwala wrote: I am getting the error in using the coling 2012 sty

Re: pdfTeX error: pdflatex (file bchr8a.pfb): cannot open Type 1 font file for rea

Aliabbas Petiwala wrote: what i did is just import the coling tex file from that zip folder in lyx and i am getting those errors.Ya all the problems are in the tex file Then post this LyX file please, and also all the sty and TeX files. I'm willing to help, but I do not want to first download

Re: pdfTeX error: pdflatex (file bchr8a.pfb): cannot open Type 1 font file for rea

the error. HTH Jürgen

Re: pdfTeX error: pdflatex (file bchr8a.pfb): cannot open Type 1 font file for rea

on the inputenc call in order to determine the encoding of the latex file. If this line is missing, tex2lyx assumes the encoding is latin1. This happens in your case. The file, however, is encoded in utf8, and thus some glyphs are imported wrongly, which triggers the error. HTH Jürgen

Re: pdfTeX error: pdflatex (file bchr8a.pfb): cannot open Type 1 font file for rea

Aliabbas Petiwala wrote: wont it be possible to change the converter to not assume things and detect the encoding from the doc itself? I'm not very familiar with the tex2lyx internals, but I fear it's not easy to do that (this has already been considered). Jürgen

Re: Knitr (Rnw) Rscript error log

On 10/1/12 12:15 AM, Yihui Xie wrote: Wonderful. That is the root of the problem. The locale should not be C. This bug has been biting us: http://www.lyx.org/trac/ticket/7741 If you are using the German translation of the GUI, you can set the interface language option to be Default in the

Re: Knitr (Rnw) Rscript error log

Le 01/10/12 21:37, Michael Bach a écrit : On 10/1/12 12:15 AM, Yihui Xie wrote: I am using an American locale and GUI, so interface language default does not work. What do you mean exactly? Is it just that the US GUI is not convenient to you? You do not need the German UI to input German

Re: Knitr (Rnw) Rscript error log

That is something confused me as well. Here is a screenshot of what I was talking about: http://i.imgur.com/vkLhP.png It only sets the language of the GUI and will not affect the document itself. Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department

Re: pdfTeX error: pdflatex (file bchr8a.pfb): cannot open Type 1 font file for rea

Aliabbas Petiwala wrote: > Thanks Jurgen, it solved the problem by installing charter font which was > not installed, but after importing coling2012.tex as shown below, i am > getting errors(i have commented line :%\usepackage[utf8]{inputenc}): > ! Package inputenc Error: Keyboard ch

Re: pdfTeX error: pdflatex (file bchr8a.pfb): cannot open Type 1 font file for rea

Thanks Jurgen after following your steps, now another error crops up: LaTeX Font Info: Font shape `MDA/mdbch/m/n' will be (Font) scaled to size 4.80003pt on input line 84. LaTeX Font Info: Font shape `MDB/mdbch/m/n' will be (Font) scaled to size 4.80003pt on input line 84. ! Package inputenc

Re: pdfTeX error: pdflatex (file bchr8a.pfb): cannot open Type 1 font file for rea

Aliabbas Petiwala wrote: > Thanks Jurgen after following your steps, now another error crops up: > > LaTeX Font Info: Font shape `MDA/mdbch/m/n' will be > > (Font) scaled to size 4.80003pt on input line 84. > > LaTeX Font Info: Font shape `MDB/mdbch/m/n' will be >

Re: pdfTeX error: pdflatex (file bchr8a.pfb): cannot open Type 1 font file for rea

I am getting the error in using the coling 2012 sty files at http://coling2012-iitb.org/doc/coling-latex.zip copying in the relevant miktex folder) On Mon, Oct 1, 2012 at 2:21 PM, Jürgen Spitzmüller <sp...@lyx.org> wrote: > Aliabbas Petiwala wrote: > > Thanks Jurgen after follo

Re: pdfTeX error: pdflatex (file bchr8a.pfb): cannot open Type 1 font file for rea

Aliabbas Petiwala wrote: > I am getting the error in using the coling 2012 sty files at > http://coling2012-iitb.org/doc/coling-latex.zip copying in the relevant > miktex folder) If you do not provide a minimal example file, I cannot help you further. (The coling2000.sty file its

Re: pdfTeX error: pdflatex (file bchr8a.pfb): cannot open Type 1 font file for rea

what i did is just import the coling tex file from that zip folder in lyx and i am getting those errors.Ya all the problems are in the tex file On Mon, Oct 1, 2012 at 5:16 PM, Jürgen Spitzmüller <sp...@lyx.org> wrote: > Aliabbas Petiwala wrote: > > I am getting the error in using

Re: pdfTeX error: pdflatex (file bchr8a.pfb): cannot open Type 1 font file for rea

Aliabbas Petiwala wrote: > what i did is just import the coling tex file from that zip folder in lyx > and i am getting those errors.Ya all the problems are in the tex file Then post this LyX file please, and also all the sty and TeX files. I'm willing to help, but I do not want to first

Re: pdfTeX error: pdflatex (file bchr8a.pfb): cannot open Type 1 font file for rea

ers the error. HTH Jürgen

Re: pdfTeX error: pdflatex (file bchr8a.pfb): cannot open Type 1 font file for rea

blem. > > Explanation: > > tex2lyx, LyX's tex converter, relies on the inputenc call in order to > determine the encoding of the latex file. If this line is missing, tex2lyx > assumes the encoding is latin1. This happens in your case. The file, > however, > is encoded in utf8, an

Re: pdfTeX error: pdflatex (file bchr8a.pfb): cannot open Type 1 font file for rea

Aliabbas Petiwala wrote: > wont it be possible to change the converter to not assume things and detect > the encoding from the doc itself? I'm not very familiar with the tex2lyx internals, but I fear it's not easy to do that (this has already been considered). Jürgen

Re: Knitr (Rnw) Rscript error log

On 10/1/12 12:15 AM, Yihui Xie wrote: Wonderful. That is the root of the problem. The locale should not be C. This bug has been biting us: http://www.lyx.org/trac/ticket/7741 If you are using the German translation of the GUI, you can set the interface language option to be Default in the

Re: Knitr (Rnw) Rscript error log

Le 01/10/12 21:37, Michael Bach a écrit : On 10/1/12 12:15 AM, Yihui Xie wrote: I am using an American locale and GUI, so interface language default does not work. What do you mean exactly? Is it just that the US GUI is not convenient to you? You do not need the German UI to input German

Re: Knitr (Rnw) Rscript error log

That is something confused me as well. Here is a screenshot of what I was talking about: http://i.imgur.com/vkLhP.png It only sets the language of the GUI and will not affect the document itself. Regards, Yihui -- Yihui Xie Phone: 515-294-2465 Web: http://yihui.name

Re: pdfTeX error: pdflatex (file bchr8a.pfb): cannot open Type 1 font file for rea

Aliabbas Petiwala wrote: I am getting the following error in using the coling 2012 sty files http://coling2012-iitb.org/doc/coling-latex.zip(copying in the relevant miktex folder) pdfTeX error: pdflatex (file bchr8a.pfb): cannot open Type 1 font file for rea You need to activate the map

Re: Knitr (Rnw) Rscript error log

. Sorry about the confusion! The error occurs only on Mac OS X 10.8.2 Mountain Lion. The problem I think is related to the fact that I work on the same code base from both Windows 7 and Mac OS X using a git repository. To handle end-of-line characters differently, there is an option in git

Re: Knitr (Rnw) Rscript error log

I found the error source, but have no clue for a fix yet. The resulting .tex document after a LyX-caused knit() is cut off exactly at the first occurrence of a German diacritic o, i.e. the character ö. This is also in line with the fact that the knitr-minimal example runs fine since

Re: Knitr (Rnw) Rscript error log

State University 2215 Snedecor Hall, Ames, IA On Sun, Sep 30, 2012 at 2:11 PM, Michael Bach pha...@gmail.com wrote: I found the error source, but have no clue for a fix yet. The resulting .tex document after a LyX-caused knit() is cut off exactly at the first occurrence of a German diacritic o

Re: Knitr (Rnw) Rscript error log

On 9/30/12 10:51 PM, Yihui Xie wrote: You can make a copy of that document, delete everything in it, and only put a code chunk = sessionInfo() @ there and compile it. Then show us the results from sessionInfo(). Good idea, it is as I suspected: sessionInfo() ## R version 2.15.1

Re: Knitr (Rnw) Rscript error log

Wonderful. That is the root of the problem. The locale should not be C. This bug has been biting us: http://www.lyx.org/trac/ticket/7741 If you are using the German translation of the GUI, you can set the interface language option to be Default in the preferences. Otherwise you have to wait for

Re: pdfTeX error: pdflatex (file bchr8a.pfb): cannot open Type 1 font file for rea

THE SAME error: !pdfTeX error: pdflatex (file bchr8a.pfb): cannot open Type 1 font file for rea i really cant figure out what to do and how to install this bchr8a? Thanks On Sun, Sep 30, 2012 at 2:34 PM, Jürgen Spitzmüller sp...@lyx.org wrote: Aliabbas Petiwala wrote: I am getting

Re: pdfTeX error: pdflatex (file bchr8a.pfb): cannot open Type 1 font file for rea

Aliabbas Petiwala wrote: BUT I GET THE SAME error: !pdfTeX error: pdflatex (file bchr8a.pfb): cannot open Type 1 font file for rea i really cant figure out what to do and how to install this bchr8a? Maybe the fonts themselves are not installed properly. Try to deinstall and reinstall

Re: pdfTeX error: pdflatex (file bchr8a.pfb): cannot open Type 1 font file for rea

Aliabbas Petiwala wrote: I am getting the following error in using the coling 2012 sty files http://coling2012-iitb.org/doc/coling-latex.zip(copying in the relevant miktex folder) pdfTeX error: pdflatex (file bchr8a.pfb): cannot open Type 1 font file for rea You need to activate the map

Re: Knitr (Rnw) Rscript error log

. Sorry about the confusion! The error occurs only on Mac OS X 10.8.2 Mountain Lion. The problem I think is related to the fact that I work on the same code base from both Windows 7 and Mac OS X using a git repository. To handle end-of-line characters differently, there is an option in git

Re: Knitr (Rnw) Rscript error log

I found the error source, but have no clue for a fix yet. The resulting .tex document after a LyX-caused knit() is cut off exactly at the first occurrence of a German diacritic o, i.e. the character ö. This is also in line with the fact that the knitr-minimal example runs fine since

Re: Knitr (Rnw) Rscript error log

State University 2215 Snedecor Hall, Ames, IA On Sun, Sep 30, 2012 at 2:11 PM, Michael Bach pha...@gmail.com wrote: I found the error source, but have no clue for a fix yet. The resulting .tex document after a LyX-caused knit() is cut off exactly at the first occurrence of a German diacritic o

Re: Knitr (Rnw) Rscript error log

On 9/30/12 10:51 PM, Yihui Xie wrote: You can make a copy of that document, delete everything in it, and only put a code chunk = sessionInfo() @ there and compile it. Then show us the results from sessionInfo(). Good idea, it is as I suspected: sessionInfo() ## R version 2.15.1

Re: Knitr (Rnw) Rscript error log

Wonderful. That is the root of the problem. The locale should not be C. This bug has been biting us: http://www.lyx.org/trac/ticket/7741 If you are using the German translation of the GUI, you can set the interface language option to be Default in the preferences. Otherwise you have to wait for

Re: pdfTeX error: pdflatex (file bchr8a.pfb): cannot open Type 1 font file for rea

THE SAME error: !pdfTeX error: pdflatex (file bchr8a.pfb): cannot open Type 1 font file for rea i really cant figure out what to do and how to install this bchr8a? Thanks On Sun, Sep 30, 2012 at 2:34 PM, Jürgen Spitzmüller sp...@lyx.org wrote: Aliabbas Petiwala wrote: I am getting

Re: pdfTeX error: pdflatex (file bchr8a.pfb): cannot open Type 1 font file for rea

Aliabbas Petiwala wrote: BUT I GET THE SAME error: !pdfTeX error: pdflatex (file bchr8a.pfb): cannot open Type 1 font file for rea i really cant figure out what to do and how to install this bchr8a? Maybe the fonts themselves are not installed properly. Try to deinstall and reinstall

Re: pdfTeX error: pdflatex (file bchr8a.pfb): cannot open Type 1 font file for rea

Aliabbas Petiwala wrote: > I am getting the following error in using the coling 2012 sty files > http://coling2012-iitb.org/doc/coling-latex.zip(copying in the relevant > miktex folder) > > pdfTeX error: pdflatex (file bchr8a.pfb): cannot open Type 1 font file for > rea Yo

Re: Knitr (Rnw) Rscript error log

nts/..." I think that is Mac OS, although in the first email it was Windows 7. Sorry about the confusion! The error occurs only on Mac OS X 10.8.2 Mountain Lion. The problem I think is related to the fact that I work on the same code base from both Windows 7 and Mac OS X

Re: Knitr (Rnw) Rscript error log

I found the error source, but have no clue for a fix yet. The resulting .tex document after a LyX-caused knit() is cut off exactly at the first occurrence of a German diacritic o, i.e. the character ö. This is also in line with the fact that the knitr-minimal example runs fine since

Re: Knitr (Rnw) Rscript error log

ment of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA On Sun, Sep 30, 2012 at 2:11 PM, Michael Bach <pha...@gmail.com> wrote: > I found the error source, but have no clue for a fix yet. The resulting .tex > document after a LyX-caused knit() is cut off exactly at the

Re: Knitr (Rnw) Rscript error log

On 9/30/12 10:51 PM, Yihui Xie wrote: You can make a copy of that document, delete everything in it, and only put a code chunk <<>>= sessionInfo() @ there and compile it. Then show us the results from sessionInfo(). Good idea, it is as I suspected: sessionInfo() ## R version 2.15.1

Re: Knitr (Rnw) Rscript error log

Wonderful. That is the root of the problem. The locale should not be C. This bug has been biting us: http://www.lyx.org/trac/ticket/7741 If you are using the German translation of the GUI, you can set the interface language option to be Default in the preferences. Otherwise you have to wait for

Re: pdfTeX error: pdflatex (file bchr8a.pfb): cannot open Type 1 font file for rea

THE SAME error: !pdfTeX error: pdflatex (file bchr8a.pfb): cannot open Type 1 font file for rea i really cant figure out what to do and how to install this bchr8a? Thanks On Sun, Sep 30, 2012 at 2:34 PM, Jürgen Spitzmüller <sp...@lyx.org> wrote: > Aliabbas Petiwala wrote: > &g

Re: pdfTeX error: pdflatex (file bchr8a.pfb): cannot open Type 1 font file for rea

Aliabbas Petiwala wrote: > BUT I GET THE SAME error: > > !pdfTeX error: pdflatex (file bchr8a.pfb): cannot open Type 1 font file for > rea > > > i really cant figure out what to do and how to install this bchr8a? Maybe the fonts themselves are not installed prope

Re: Knitr (Rnw) Rscript error log

produces a skryptum.tex file that can be tex'ed correctly and contains the \Sepr{} parts. Also, the .Rnw file is complete, i.e. not cut off like the .tex file. So I guess the Rscript call messes things up? I tried the hint by Scott on setting an error hook, but to no avail. How to debug further

Re: Knitr (Rnw) Rscript error log

Just a quick follow-up. I gather from the log that R reads the file as UTF-8. I checked my System $ locale and the R Sys.getlocale() Both are correctly set up as en_US.UTF-8. Just to rule that one out(?)...

Re: Knitr (Rnw) Rscript error log

Does the knitr example file work? I forget how to get to example files on MacOS. Mabye Yihui will have an idea of what's going on, but in the meantime if you want to try something, you can try with the newest version of LyX's knitr module that Yihui sent in a couple of days ago. To do this, you

Re: Knitr (Rnw) Rscript error log

I think this indicated the problem in your log: 12:13:14.670: Warning in readLines(input, warn = FALSE) : 12:13:14.673: invalid input found on input connection 'skryptum.Rnw' But without a reproducible example, I'm afraid I cannot do anything, especially I do not have Mac OS to test with.

Re: Knitr (Rnw) Rscript error log

On Sat, Sep 29, 2012 at 5:34 PM, Yihui Xie x...@yihui.name wrote: I think this indicated the problem in your log: 12:13:14.670: Warning in readLines(input, warn = FALSE) : 12:13:14.673: invalid input found on input connection 'skryptum.Rnw' But without a reproducible example, I'm afraid I

Re: Knitr (Rnw) Rscript error log

He sent me the message log without cc'ing the list, and I saw 12:13:14.353: Rscript --verbose --no-save --no-restore /Applications/LyX.app/Contents/Resources/scripts/lyxknitr.R /var/folders/yx/tvnzczfx7c31c68jrddvlqgrgn/T/lyx_tmpdir.xJL523/lyx_tmpbuf3/skryptum.Rnw

Re: Knitr (Rnw) Rscript error log

On Sat, Sep 29, 2012 at 5:43 PM, Yihui Xie x...@yihui.name wrote: He sent me the message log without cc'ing the list, and I saw 12:13:14.353: Rscript --verbose --no-save --no-restore /Applications/LyX.app/Contents/Resources/scripts/lyxknitr.R

Re: Knitr (Rnw) Rscript error log

produces a skryptum.tex file that can be tex'ed correctly and contains the \Sepr{} parts. Also, the .Rnw file is complete, i.e. not cut off like the .tex file. So I guess the Rscript call messes things up? I tried the hint by Scott on setting an error hook, but to no avail. How to debug further

Re: Knitr (Rnw) Rscript error log

Just a quick follow-up. I gather from the log that R reads the file as UTF-8. I checked my System $ locale and the R Sys.getlocale() Both are correctly set up as en_US.UTF-8. Just to rule that one out(?)...

Re: Knitr (Rnw) Rscript error log

Does the knitr example file work? I forget how to get to example files on MacOS. Mabye Yihui will have an idea of what's going on, but in the meantime if you want to try something, you can try with the newest version of LyX's knitr module that Yihui sent in a couple of days ago. To do this, you

Re: Knitr (Rnw) Rscript error log

I think this indicated the problem in your log: 12:13:14.670: Warning in readLines(input, warn = FALSE) : 12:13:14.673: invalid input found on input connection 'skryptum.Rnw' But without a reproducible example, I'm afraid I cannot do anything, especially I do not have Mac OS to test with.

Re: Knitr (Rnw) Rscript error log

On Sat, Sep 29, 2012 at 5:34 PM, Yihui Xie x...@yihui.name wrote: I think this indicated the problem in your log: 12:13:14.670: Warning in readLines(input, warn = FALSE) : 12:13:14.673: invalid input found on input connection 'skryptum.Rnw' But without a reproducible example, I'm afraid I

Re: Knitr (Rnw) Rscript error log

He sent me the message log without cc'ing the list, and I saw 12:13:14.353: Rscript --verbose --no-save --no-restore /Applications/LyX.app/Contents/Resources/scripts/lyxknitr.R /var/folders/yx/tvnzczfx7c31c68jrddvlqgrgn/T/lyx_tmpdir.xJL523/lyx_tmpbuf3/skryptum.Rnw

Re: Knitr (Rnw) Rscript error log

On Sat, Sep 29, 2012 at 5:43 PM, Yihui Xie x...@yihui.name wrote: He sent me the message log without cc'ing the list, and I saw 12:13:14.353: Rscript --verbose --no-save --no-restore /Applications/LyX.app/Contents/Resources/scripts/lyxknitr.R

Re: Knitr (Rnw) Rscript error log

") which produces a skryptum.tex file that can be tex'ed correctly and contains the \Sepr{} parts. Also, the .Rnw file is complete, i.e. not cut off like the .tex file. So I guess the Rscript call messes things up? I tried the hint by Scott on setting an error hook, but to no avail. How to

Re: Knitr (Rnw) Rscript error log

Just a quick follow-up. I gather from the log that R reads the file as UTF-8. I checked my System $ locale and the R > Sys.getlocale() Both are correctly set up as en_US.UTF-8. Just to rule that one out(?)...

Re: Knitr (Rnw) Rscript error log

Does the knitr example file work? I forget how to get to example files on MacOS. Mabye Yihui will have an idea of what's going on, but in the meantime if you want to try something, you can try with the newest version of LyX's knitr module that Yihui sent in a couple of days ago. To do this, you

Re: Knitr (Rnw) Rscript error log

I think this indicated the problem in your log: 12:13:14.670: Warning in readLines(input, warn = FALSE) : 12:13:14.673: invalid input found on input connection 'skryptum.Rnw' But without a reproducible example, I'm afraid I cannot do anything, especially I do not have Mac OS to test with.

Re: Knitr (Rnw) Rscript error log

On Sat, Sep 29, 2012 at 5:34 PM, Yihui Xie wrote: > I think this indicated the problem in your log: > > 12:13:14.670: Warning in readLines(input, warn = FALSE) : > 12:13:14.673: invalid input found on input connection 'skryptum.Rnw' > > But without a reproducible example, I'm

Re: Knitr (Rnw) Rscript error log

He sent me the message log without cc'ing the list, and I saw 12:13:14.353: Rscript --verbose --no-save --no-restore "/Applications/LyX.app/Contents/Resources/scripts/lyxknitr.R" "/var/folders/yx/tvnzczfx7c31c68jrddvlqgrgn/T/lyx_tmpdir.xJL523/lyx_tmpbuf3/""skryptum.Rnw"

Re: Knitr (Rnw) Rscript error log

On Sat, Sep 29, 2012 at 5:43 PM, Yihui Xie wrote: > He sent me the message log without cc'ing the list, and I saw > > 12:13:14.353: Rscript --verbose --no-save --no-restore > "/Applications/LyX.app/Contents/Resources/scripts/lyxknitr.R" >

Knitr (Rnw) Rscript error log

Dear LyX Developers and Users, I am using LyX 2.0.4 on Windows 7 with the knitr (Rnw) module. I successfully compiled the knitr-minimal.lyx example file and moved on to the knitr-manual.lyx. I then get an error message that Rscript failed. Can someone give me a hint on how to get a debug log

Re: Knitr (Rnw) Rscript error log

On Wed, Sep 26, 2012 at 5:54 AM, Michael Bach pha...@gmail.com wrote: Dear LyX Developers and Users, I am using LyX 2.0.4 on Windows 7 with the knitr (Rnw) module. I successfully compiled the knitr-minimal.lyx example file and moved on to the knitr-manual.lyx. I then get an error message

Re: Knitr (Rnw) Rscript error log

Hi Scott, Thanks for responses. Look in the terminal output. It might give you the error. I cannot find a terminal output view in LyX - checked all toolbars and View menu. You could alternatively do File Export R/S code and then run/debug the resulting file in R. I tried

Re: Knitr (Rnw) Rscript error log

of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA On Wed, Sep 26, 2012 at 10:16 AM, Michael Bach pha...@gmail.com wrote: Hi Scott, Thanks for responses. Look in the terminal output. It might give you the error. I cannot find a terminal output view in LyX - checked all

Re: Knitr (Rnw) Rscript error log

be interested in setting an error hook (a command that is run when an error occurs). Otherwise if your document exports fine you might not realize that there could be an error (knitr will print the error message to your latex document but it will appear to compile just fine). For example, knit_hooks$set

Knitr (Rnw) Rscript error log

Dear LyX Developers and Users, I am using LyX 2.0.4 on Windows 7 with the knitr (Rnw) module. I successfully compiled the knitr-minimal.lyx example file and moved on to the knitr-manual.lyx. I then get an error message that Rscript failed. Can someone give me a hint on how to get a debug log

Re: Knitr (Rnw) Rscript error log

On Wed, Sep 26, 2012 at 5:54 AM, Michael Bach pha...@gmail.com wrote: Dear LyX Developers and Users, I am using LyX 2.0.4 on Windows 7 with the knitr (Rnw) module. I successfully compiled the knitr-minimal.lyx example file and moved on to the knitr-manual.lyx. I then get an error message

Re: Knitr (Rnw) Rscript error log

Hi Scott, Thanks for responses. Look in the terminal output. It might give you the error. I cannot find a terminal output view in LyX - checked all toolbars and View menu. You could alternatively do File Export R/S code and then run/debug the resulting file in R. I tried

Re: Knitr (Rnw) Rscript error log

of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA On Wed, Sep 26, 2012 at 10:16 AM, Michael Bach pha...@gmail.com wrote: Hi Scott, Thanks for responses. Look in the terminal output. It might give you the error. I cannot find a terminal output view in LyX - checked all

Re: Knitr (Rnw) Rscript error log

be interested in setting an error hook (a command that is run when an error occurs). Otherwise if your document exports fine you might not realize that there could be an error (knitr will print the error message to your latex document but it will appear to compile just fine). For example, knit_hooks$set

Knitr (Rnw) Rscript error log

Dear LyX Developers and Users, I am using LyX 2.0.4 on Windows 7 with the knitr (Rnw) module. I successfully compiled the knitr-minimal.lyx example file and moved on to the knitr-manual.lyx. I then get an error message that Rscript failed. Can someone give me a hint on how to get a debug log

Re: Knitr (Rnw) Rscript error log

On Wed, Sep 26, 2012 at 5:54 AM, Michael Bach <pha...@gmail.com> wrote: > Dear LyX Developers and Users, > > I am using LyX 2.0.4 on Windows 7 with the knitr (Rnw) module. I successfully > compiled the knitr-minimal.lyx example file and moved on to the > knitr-manual.lyx

Re: Knitr (Rnw) Rscript error log

Hi Scott, Thanks for responses. > Look in the terminal output. It might give you the error. > I cannot find a terminal output view in LyX - checked all toolbars and View menu. > You could alternatively do File > Export > R/S code and then run/debug > the resulting file

Re: Knitr (Rnw) Rscript error log

ihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA On Wed, Sep 26, 2012 at 10:16 AM, Michael Bach <pha...@gmail.com> wrote: > Hi Scott, > > Thanks for responses. > >> Look in the terminal output. It might give you the error. >> > >

Re: Knitr (Rnw) Rscript error log

l, You might also be interested in setting an error hook (a command that is run when an error occurs). Otherwise if your document exports fine you might not realize that there could be an error (knitr will print the error message to your latex document but it will appear to compile just

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