Greetings all - I'm sorry to say that due to other commitments I have
to give up maintainership of the 3 ports that I have been looking after:
ncbi_tools
EMBOSS
mcl
ncbi_tools has a bug #19513 that needs to be fixed, otherwise they are
low maintenance!
cheers
Mike
__
I am writing a portfile for the perl module package bioperl. The
package uses a Build.PL script instead of Makefile.PL. The script
fixes dependencies by installing perl modules with CPAN, and even
upgrades CPAN in Mac OS leopard. I know very little about these
configuration and build sys
I am writing a new portfile for a package but I keep getting errors
during the installation step:
---> Staging hmmer into destroot
---> Installing hmmer 2.3.2_0
couldn't change working directory to "/opt/local/var/macports/build/
_Users_mike_macports_dports_science_hmmer/work/destroot": no s
I am listed as the maintainer for one port - ncbi_tools and I have a
few other ports that I would like to submit to the repository.
According to the macports guide, I should be using subversion to
maintain my ports. You probably don't want me mucking about in your
subversion repo until yo
The port of the ncbi_tools package would really benefit from having a
couple of environment variables set for users at install time. When I
took over the package I asked if there was a way for a Portfile to do
this and the answer (at that time) was no. Maybe something has
changed since?
the software and see if he has any tips
Mike
Harry
2008/7/29 Michael Thon <[EMAIL PROTECTED]>
This is most probably a bison bug (solved Febr 2008 for OSX). The
bison version that comes with XCode is too old. Try using the bison
from macports: "sudo port install bison" and try
>>
>> This is most probably a bison bug (solved Febr 2008 for OSX). The
>> bison version that comes with XCode is too old. Try using the bison
>> from macports: "sudo port install bison" and try again.
>
> And/or "sudo port install flex" since the error mentioned flex.
>
> If you do get this to com
On Jul 28, 2008, at 7:17 PM, Harry van der Wolf wrote:
> You do not tell us whether you are using a cmake or a .configure
> config tool, but in case it is an automake .configure tool, you
> should use something like:
> "export CFLAGS="-I/opt/local/include"
> "export CXXFLAGS="-I/opt/local/inc
I'm trying to compile a software package on the command line (not
using macports) but I get and error when running configure "Could not
find expat header". I have the expat port installed but I guess it is
not in a place where my package can find it. Is there anything I can
do to get conf
Thanks to the handy instructions on the wiki, I was able to download
the Portfile for the previous version of openssl and then get it and
wine installed.
Now I just upgraded openssl and recompiled wine. All appears to be
running smoothly.
Cheers
Mike
___
Hi all - I get the following error when I try to upgrade the port wine
( :) )
I'm using a macbook with Mac OS 10.5.3. openssl and gcc were both
upgraded recently I think. Any idea what the problem is?
Cheers
Mike
[EMAIL PROTECTED] ~]$ sudo port upgrade wine
---> Fetching wine
---> Verify
On Jan 22, 2008, at 5:28 PM, Matt Scilipoti wrote:
It would be nice if we listed which apps are tested. I expect this
would go in http://ncbi_tools.darwinports.com/ and possibly the
portfile? It looks like we don't have access to any of the readme
files.
I have considered making a general inf
Hi Matt - Thanks for letting me know about the outdated port. I'm
updating it now and I should be able to submit it to trak later
today. When it appears in the repository, i'd appreciate it if you
test it and give me some feedback. This port is a 'work in
progress'. I haven't tested all
When I try to upgrade gtk2 I get the following error:
/bin/sh: line 1: gtkdoc-rebase: command not found
and I am unable to upgrade the package. This happens whether I use
"sudo port upgrade gtk2" or "sudo port -f upgrade gtk2". "port
outdated" says that I have 2.12.1_0 installed and 2.1
On Dec 5, 2007, at 11:35 AM, Ryan Schmidt wrote:
On Dec 5, 2007, at 03:28, Michael Thon wrote:
I am having a problem with mysql tables that are created via php
occasionally appearing in mysql with lower case names. I now have
to solve two problems:
1) how do I restart the sever via the
Hola -
I am having a problem with mysql tables that are created via php
occasionally appearing in mysql with lower case names. I now have to
solve two problems:
1) how do I restart the sever via the command line? At the moment it
starts at boot via the launchctl file. If I issue:
On Dec 5, 2007, at 8:01 AM, Ryan Schmidt wrote:
On Dec 4, 2007, at 23:49, Michael Thon wrote:
Greetings - I am running php5 on Mac OS 10.4 Intel. When I execute
a php command line script, php prints the contents of the script on
the terminal rather than executing it. If I run the
Greetings - I am running php5 on Mac OS 10.4 Intel. When I execute a
php command line script, php prints the contents of the script on the
terminal rather than executing it. If I run the script with apple's
php the script runs fine. the same script also runs ok on a linux box
with php 5.
Linux people generally recommend that you do not compile source code
with a user that has superuser privileges, which I assume is a guard
against possibly malicious commands that may be in the compile
scripts. When I install packages with macports (sudo port install
xyz) they're compiled
I changed my email address in my macports.org profile and now the
website won't let me log in. I'm using my new email address as my
user id. Am I doing something wrong? Is there a way to get a
password reminder?
Cheers
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I am getting an error "could not find ParserDetails.ini" when I try
to use this perl module. Has anyone else had the same problem?
Here is a relevant blurb that I found on the perl-XML web site,
though it does not help me to figure out what the problem is:
http://perl-xml.sourceforge.net/faq/
Is there any to perform distributed compiling with macports?
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macports-users@lists.macosforge.org
http://lists.macosforge.org/mailman/listinfo/macports-users
On Sep 6, 2007, at 11:32 AM, Ryan Schmidt wrote:
On Sep 6, 2007, at 02:54, Michael Thon wrote:
On Sep 6, 2007, at 3:14 AM, Anthony Michael Agelastos wrote:
Why use Vine Server when Apple's Remote Desktop does the same
thing (is VNC) and is a feature of OS X Tiger? I use TightV
32 PM, Lorenz Schori wrote:
I use this one:
http://www.redstonesoftware.com/products/vine/server/vineosx/
On 05.09.2007, at 19:24, Michael Thon wrote:
Greetings - I am setting up a mac with multiple remote users.
The users would like to have access to the standard Mac OS
desktop via vnc. From w
wrote:
I use this one:
http://www.redstonesoftware.com/products/vine/server/vineosx/
On 05.09.2007, at 19:24, Michael Thon wrote:
Greetings - I am setting up a mac with multiple remote users. The
users would like to have access to the standard Mac OS desktop via
vnc. From what I have
Greetings - I am setting up a mac with multiple remote users. The
users would like to have access to the standard Mac OS desktop via
vnc. From what I have found so far on the internet, this might be
possible as long as multiple user switching is enabled (which it is).
I installed tightvnc
Are they useful for something besides backing out
of an upgrade?
On Jul 27, 2007, at 12:55 PM, Jyrki Wahlstedt wrote:
On 27.7.2007, at 13.44, Michael Thon wrote:
Could someone explain to me what an inactive port is?
Cheers
Mike
___
Hi,
yo
Could someone explain to me what an inactive port is?
Cheers
Mike
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Portfiles for Perl modules from CPAN are really easy to make. While
making a portfile I discovered that the package has a list of
dependencies and some of those dependencies also have dependencies
that are not yet in macports. Now I have a list of at least 10
portfiles that I need to make
I was starting to suspect this too. I tried various things, like
doing the account update suggested by macosforge ( http://
www.macosforge.org/?p=5 ) and creating a new account but neither seem
to give me write access to the wiki. I can submit tickets to trac
though.
Mike
On May 21, 2
, correct it. Leading in the
wiki context is contributing information about what you know. And
monitoring the contributions of others.
Fred
-Original Message-
From: Michael Thon [mailto:[EMAIL PROTECTED]
Sent: Friday, May 11, 2007 12:54 AM
To: 'James Berry'
Cc: 'PortMgr&
Agreed! I don't have the time nor the experience to lead any sort of
organized documentation effort but I'd be happy to help out where I
can. Is this something that can be done by committee? Or, better
yet, wild, wild west style? It is a Wiki afterall :)
Hello - I am having trouble with a new Portfile that I'm writing.
Here is the relevant part of the debug output:
DEBUG: Executing com.apple.install (hmmer)
couldn't change working directory to "/opt/local/var/db/dports/build/
_Users_mike_macports_dports_science_hmmer/work/destroot": no such
These instructions were pretty helpful in getting apache and php5
running on my mac. Should they be in the wiki? I'm writing down the
steps I took to get these apps working (less NeDi). Can I contribute
it to the wiki?
Mike
On Apr 29, 2007, at 5:59 PM, Mark Duling wrote:
Michael
Greetings -
I would like my Portfile to create new directories and set system
wide environment variables. Can anyone showl me the right way to do
this or point me to an example?
Thanks!
Mike
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Hi Ryan -
Thanks for your suggestions. Since I will be admin-ing my own
machines I want to keep things as simple as possible. I'm planning
to buy Mac Pro for my web server so I can dispense with the rack
hardware, thus my need to decide whether to buy OSX Server- its an
extra 500 euro t
Hi All - I'm setting up my research computing environment at a new
university and I'm thinking of buying all apple hardware and running
Mac OS X rather than linux, as I have done in the past. I have been
tinkering with macports for a while on my macbook and it seems to be
a great way to ma
I successfully installed xsane and it recognized my scanner but the
scanned images are full of artifacts - wide vertical lines and
spots. I also got xsane working in ubuntu linux, installed in
Parallels and it works fine. I compared the contents of the files /
opt/local/etc/sane.d/umax* (i
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