Dear MARMAMers,

 

My colleagues and are delighted to share our new open access publication in 
Ecography. 

 

The paper presents a standard protocol (called ‘ODMAP’) for building and 
reporting on species distribution models (SDMs), with direct relevance to 
marine mammal research.

 

ODMAP was designed as a structured checklist that details the key steps 
involved in the development and analysis of modern SDMs. With it, we hope to 
increase the transparency and reproducibility of SDM studies, facilitate 
peer-review and expert evaluation of model quality, support meta‐analyses, and 
encourage model users to consider various aspects of the modelling workflow 
that may sometimes be overlooked.

 

Zurell D, Franklin J, König C, Bouchet PJ, Serra-Diaz JM, Dormann CF, Elith J, 
Fandos Guzman G, Feng X, Guillera-Arroita G, Guisan A, Leitão PJ, Lahoz-Monfort 
JJ, Park DS, Peterson AT, Raacciuolo G, Schmatz DR, Schröder B, Thuiller W, 
Yates KL, Zimmermann NE, Merow C (2020). A standard protocol for reporting 
species distribution models. Ecography (online early).

 

https://onlinelibrary.wiley.com/doi/full/10.1111/ecog.04960

 

*Abstract*

 

Species distribution models (SDMs) constitute the most common class of models 
across ecology, evolution and conservation. The advent of ready‐to‐use software 
packages and increasing availability of digital geoinformation have 
considerably assisted the application of SDMs in the past decade, greatly 
enabling their broader use for informing conservation and management, and for 
quantifying impacts from global change. However, models must be fit for 
purpose, with all important aspects of their development and applications 
properly considered. Despite the widespread use of SDMs, standardisation and 
documentation of modelling protocols remain limited, which makes it hard to 
assess whether development steps are appropriate for end use. To address these 
issues, we propose a standard protocol for reporting SDMs, with an emphasis on 
describing how a study's objective is achieved through a series of modeling 
decisions. We call this the ODMAP (Overview, Data, Model, Assessment and 
Prediction) protocol, as its components reflect the main steps involved in 
building SDMs and other empirically‐based biodiversity models. The ODMAP 
protocol serves two main purposes. First, it provides a checklist for authors, 
detailing key steps for model building and analyses, and thus represents a 
quick guide and generic workflow for modern SDMs. Second, it introduces a 
structured format for documenting and communicating the models, ensuring 
transparency and reproducibility, facilitating peer review and expert 
evaluation of model quality, as well as meta‐analyses. We detail all elements 
of ODMAP, and explain how it can be used for different model objectives and 
applications, and how it complements efforts to store associated metadata and 
define modelling standards. We illustrate its utility by revisiting nine 
previously published case studies, and provide an interactive web‐based 
application to facilitate its use. We plan to advance ODMAP by encouraging its 
further refinement and adoption by the scientific community.

 

The paper is accompanied by a Shiny app available here at https://odmap.wsl.ch/

 

Best wishes,

Phil

 

 

Dr. Phil Bouchet | Postdoctoral Research Fellow

Centre for Research into Ecological & Environmental Modelling (CREEM)

The Observatory, Buchanan Gardens
University of St Andrews, St Andrews Fife
KY16 9LZ, Scotland (UK)

E pjbouc...@gmail.com | pb...@st-andrews.ac.uk

 

 

 

 

 

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