Hi Amarin,
I'm not sure if this will solve your problem, but are you running the Linux
version? If you are and running the script called "Mauve", it is actually a
bash script that in turn calls Java. You can view it and adjust the memory
requirements.
For example, in the script, I see:
JAVA_A
Is there value I can adjust to allow more memory for this function? I
aligned 3 1.2GB genomes but am unable to open the alignment file in the
mauve GUI. If this is not possible could anyone recommend a different
application to use for visualization? Thanks.
Exception in thread "Thread-1" java.l
