Re: [Mauve-users] Mauve 2.4 troubles...Java?

2015-02-12 Thread Aaron Darling
Hi David, intermingled with the normal output are some error messages indicating Mauve isn't able to write to the output location you've specified: "Unable to open output file "test6" for writing." I would suggest that you try the same alignment again, but take care to use the output file chooser

[Mauve-users] Mauve 2.4 troubles...Java?

2015-02-12 Thread David Boyd
I first downloaded Mauve 2.4 in mid-Dec. and it worked fine (Windows 7 Pro, 64 bit). Didn't try to use it again until a few weeks ago and just will not work. Tried some a couple of gbk and a couple of fas files. I can look at old alignments on 2.4.0 that were done in 2.3.1. Running alignment. Ex

[Mauve-users] ERROR CODE 2 : Mauve 2.40

2015-02-12 Thread Swetha Gopal
I downloaded Mauve 2.40 and while trying to perform the alignment for two mammalian bat genomes, encountered the following error. Since I am new to this whole thing, I request assistance in this regard. rying path /home/mku/Downloads/mauve_2.4.0/linux-x64/mauveAligner Running alignment. Executing

Re: [Mauve-users] Error 134 : Help required

2015-02-12 Thread Swetha Gopal
Thank you sir. But when I downloaded the recent version and tried the alignment, I was returned with the following error. trying path /home/mku/Downloads/mauve_2.4.0/linux-x64/mauveAligner Running alignment. Executing /home/mku/Downloads/mauve_2.4.0/linux-x64/mauveAligner --output=/media/New

Re: [Mauve-users] Error 134 : Help required

2015-02-12 Thread Aaron Darling
Hi Swetha, It looks like you've used the older 32-bit version of progressiveMauve. That version is limited to using 4GB of memory, which is not enough for your dataset. I'd suggest getting the current 2.4.0 release, which is 64-bit only. It is available here: http://darlinglab.org/mauve/download.h

[Mauve-users] Error 134 : Help required

2015-02-12 Thread Swetha Gopal
Hello ! Am a new user for Mauve and I tried aligning two mammalian bat genomes (rna.gbk files) but the error code 134 was returned and I am not able to find out a solution for the same. I used the Progressive Mauve and retained the default values for parameters and scoring. Do suggest a solution.