Re: [Mauve-users] making sense of information from backbone file

2015-04-01 Thread Aaron Darling
Hi Norhan, If you need programmatic access to do automated processing, you can use the coordinates in the .backbone file to query an annotation file to get the features at those particular coordinates. Probably BioPython/BioPerl/BioJava or some similar API could help with annotation parsing & queri

[Mauve-users] making sense of information from backbone file

2015-04-01 Thread Norhan Mahfouz
Hi, I am currently analyzing alignment data from 50 bacterial genomes after applying progressive mauve for the alignment. I am processing the backbone file and I was wondering how can I integrate annotation information to this knowledge, for example : from the backbone file seq1 and seq5 have in