[Mauve-users] 2 Questions: LCB and Exporting Contigs With Multiple Alignments

2015-11-16 Thread Ahmad Rajeh
Hello Mauve-users, I have 2 questions: First, could someone please explain seed weight and minimum LCB to me? The manual's descriptions are unclear to me. For example, all I want is to consider contigs that share at least 1 kb with the reference, with maximum 0.01% mismatch. How can I do that? Se

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2015-11-16 Thread Varduhi Petrosyan
Hello to whom it may concern, I am a new Mauve user and I am attempting to align 95 *Streptococcus mitis *genomes using progressiveMauve. I am using the ELF 64-bit LSB executable, x86-64, version 1 (SYSV), statically linked, for GNU/Linux 2.6.18, stripped version of progressiveMauve. The small sam