Dear Aaron,
Thanks for answering. At the moment I'm trying in the HPC system of the
university and I could run 20 genomes in one core with 20 cpu in less than two
hours. So it seems that it was a problem of computer resources. But is good to
know that I should keep my comparison under 50 genome
Hi Elena,
How much RAM does the computer running progressiveMauve have? The
software's memory requirements grow quickly with additional sequences,
and with the degree of divergence among those sequences, and it seems
likely that running out of memory could cause the problems you are
observing. I wo
Dear All Mauve users,
I have been trying to run an alignment in mauve but it is continuously
finishing with an error message when I scale the number of isolates.
I have 34 genomes from M. abscessus (one annotated reference , two complete
genenomes, contigs download from NCBI, and contigs gene
