Hello Aaron,
Thank you for your thorough reply. I do have access to UW's CHTC network. So,
if I run progressivemauve distantly on Condor can I then visualize the outputs
locally? Thanks again for this program. I'm attempting to align a de novo
(Spades) assembly of an insect with its sister spec
Hi Rosie, apologies for the late reply, I am catching up on email and
think the answer may be useful for others even if you have moved on
from this work.
First, the --scratch-path options control use of temporary storage when
building sorted seed lists (sslist index files) for very large genomes
wh
Hi Michael, I realize this is coming late, but still want to post a
reply for the benefit of others who may be curious in the future.
There are a number of ways to generate phylogenies from genome
alignments. If you want to use Mauve I suggest doing the alignment with
progressiveMauve then extracti
Hi Cristina, apologies for the late reply, I am trying to get through
the email backlog.
Would you be able to send me the alignment, input sequences, and
.backbone and .bbcols files off-list via google drive or something
similar? It is not obvious to me why you would be getting an empty file
so I w
Hi Zachary, Mark, et al,
Glad you are able to see some humor in these error messages!
Zachary, thanks for sending the log file. From that it looks like you
are attempting an alignment of genomes that are 1.1Gbp and 597Mbp,
respectively. It also appears that your computer has about 32GB of RAM,
whic
