Can you check whether the directory where the sequence files are
located is writable by the compute node and has enough space to store
the sorted seed (k-mer) list? progressiveMauve does not use TMPDIR to
store those, they go in a file with the same name as the sequence file,
with a .sslist extensi
Hi Aaron,
I have 190 GB of ram and more than 1TB of disk space available.
I redefined TMPDIR to have enough space here too.
The program fail again, at the same stage.
I only used one cultivar against its reference with default parameter.
Here are the last output lines of vmstat -S M -tn 1 before
