Hi Eleni,
Although progressiveMauve's algorithm is deterministic for a fixed
input, the algorithm itself contains some stochastic elements,
especially when aligning regions between the initial set of unique
alignment anchors. Therefore, changes to the input such as order of
genomes, or possibly ord
Hi Uwe, this information might only be implicit in the documentation.
Despite its use of MUSCLE, progressiveMauve only computes DNA-level
genome alignments. I am not aware of any software to compute protein-
level genome alignments (though it's been a while since I looked
around), possibly because
Dear list,
as a newbie: how do I find out if progressiveMauve works on DNA or AA?
The format specification provided is for DNA.
On the other hand, Mauve uses Clustal and muscle alignment tools ...
Thanks!
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Announcing
