Re: [Mauve-users] 2 Questions: LCB and Exporting Contigs With Multiple Alignments

2015-11-17 Thread Aaron Darling
Hi Rajeh, On Mon, 2015-11-16 at 17:55 -0600, Ahmad Rajeh wrote: > Hello Mauve-users, > > I have 2 questions: First, could someone please explain seed weight > and minimum LCB to me? The manual's descriptions are unclear to me. > For example, all I want is to consider contigs that share at least 1

[Mauve-users] 2 Questions: LCB and Exporting Contigs With Multiple Alignments

2015-11-16 Thread Ahmad Rajeh
Hello Mauve-users, I have 2 questions: First, could someone please explain seed weight and minimum LCB to me? The manual's descriptions are unclear to me. For example, all I want is to consider contigs that share at least 1 kb with the reference, with maximum 0.01% mismatch. How can I do that? Se