Hi Jonas, this is an issue that's specific to the Java VM that you're
using. I just wrote a separate message about it but the short story
workaround is that if you can switch to the Sun VM the problem should go
away.
On Wed, 2014-06-25 at 00:57 +1000, Jonas Torgny Larsson wrote:
> Dear all,
>
> I
Dear all,
I have a problem when trying to run ContigOrderer from command line. It works
fine from the GUI but I get some errors in the shell.
java -Xmx500m -cp /home/jlr/Build/mauve_snapshot_2012-06-07/Mauve.jar
org.gel.mauve.contigs.ContigOrderer -output test -ref NC_003210.fna -draft
42-40_2
