Hi all,
I'm a new user to Mauve but ran into a problem .
Aligning fasta files of large bacterial genomes goes fine! (progressiveMauve).
However, aligning Genbank files of the same genomes gives an error (see below)
As this error was reported before on this forum:
https://sourceforge.net/p/ma
Hi Aaron,
Thanks for your reply. Coincidentally I found out why I was getting the
error. The gbk files checked out just fine. The problem was that I did not
have the write permission to the directory where one of the GenBank files
was located (it turned out that the program would create the .sslis
Hi Hongxian,
I was able to do those alignments on a windows desktop with 16GB RAM, so
my recommendation is to re-download the genebank files from NCBI, and
try again using the DEFAULT parameters (including NOT renaming the
output files). the error
"Unhandled gnException: Exception FileNotOpe
Hello Hongxian,
Where/how did you obtain those GBK files? Downloads from the NCBI web
site in GBK format can fail to include the actual genome sequence. Can
you check whether your gbk files have the actual nucleotide sequence at
the end? The file sizes should each be around 9Mb for those two
genome
Hi,
I am new to Mauve. I've downloaded both stable 2.4.0 release and latest
snapshot, but I am running into problems while trying to align two genomes
in GenBank formats. Both genomes were downloaded from NCBI (full gbk files
with nucleotide sequences). I've tried both versions, and tried both
reg
