Re: [Mauve-users] Mauve time and memory requirements

2015-11-22 Thread Aaron Darling
Hi Franz, On Fri, 2015-11-20 at 11:07 +0100, Franz Baumdicker wrote: > you should probably also check whether the program got into an endless > loop? Fot larger sets of bacterial genomes I often get this problem. > You should see always the same numbers in the output to the console in > this ca

Re: [Mauve-users] Mauve time and memory requirements

2015-11-20 Thread Franz Baumdicker
Hi Susan, you should probably also check whether the program got into an endless loop? Fot larger sets of bacterial genomes I often get this problem. You should see always the same numbers in the output to the console in this case. Sometimes changing the order of the input genomes helps, but the

Re: [Mauve-users] Mauve time and memory requirements

2015-11-19 Thread Aaron Darling
Hi Susan, On Thu, 2015-11-19 at 20:52 +, Susan Beth Fogelson wrote: > I am using Mauve to align approximately 35 bacterial genomes to a > reference. Currently I am using a desktop computer with 16GB of RAM. > I started the alignment about 2 days ago and it is still running, is > this a normal

[Mauve-users] Mauve time and memory requirements

2015-11-19 Thread Susan Beth Fogelson
I am using Mauve to align approximately 35 bacterial genomes to a reference. Currently I am using a desktop computer with 16GB of RAM. I started the alignment about 2 days ago and it is still running, is this a normal time frame? Is there a way I can let the program access more memory to have