Re: [Mauve-users] mauve viewer

2017-04-10 Thread Aaron Darling
Hi Nisha, I notice in your screenshot that the genomes are labeled with "(no annotations loaded)". That means the viewer was unable to find and read the original sequence file that was aligned. This can happen if the files are moved around from their location after alignment, especially if the full

[Mauve-users] mauve viewer

2017-04-09 Thread Esakimuthu Pillai Nisha PILLAI
Dear All, I am using Mauve (progressive Mauve) to align whole genomes of two closely related genomes (grasscarp and zebrafish) and the objective is to determine the extent inter and intra-chromosomal rearrangements. For this comparison, a seed weight of 19 and LCB weight of 2000 was used.