[Meep-discuss] Problems scaling up 3D volume/resolution performance

2010-10-15 Thread Kristian Medri
I would like to get the transmission spectrum for a structure with: cross-section=7x7; length=20; resolution=160; =4.0141e+09 points Is this possible? What are the expected resource requirements? What is the expected runtime? How can it be optimized? I seem to get the following error: meep: Ca

Re: [Meep-discuss] problems with material dispersion of gold (metal) in meep C++

2010-04-06 Thread Kristian Medri
Dear Renaud, Could you please provide the contents of your "parameters" file? Thanks -Original Message- From: meep-discuss-boun...@ab-initio.mit.edu [mailto:meep-discuss-boun...@ab-initio.mit.edu] On Behalf Of Renaud Vallée Sent: March 2, 2010 10:36 AM To: Nizamov Shawkat Cc: meep-discu

Re: [Meep-discuss] poor parallelization traced to function update_dft

2010-03-22 Thread Kristian Medri
Which version of MEEP does it run? I don't see any specs here: http://nano.anl.gov/facilities/theory_modeling_cap.html http://thread.gmane.org/gmane.comp.science.electromagnetism.meep.general/248 2 http://thread.gmane.org/gmane.comp.science.electromagnetism.meep.general/252 6 http://thread.gmane.or

Re: [Meep-discuss] Passing a variable to the eps funtion

2010-03-01 Thread Kristian Medri
With some debugging the code works, though I still do not know where to put something like this into the code: use_anisotropic_averaging=0; Thanks -Original Message- From: meep-discuss-boun...@ab-initio.mit.edu [mailto:meep-discuss-boun...@ab-initio.mit.edu] On Behalf Of Kristian Medri

Re: [Meep-discuss] Passing a variable to the eps funtion

2010-02-26 Thread Kristian Medri
y); master_printf("holey-wvg-cavity.cpp finished.\n"); return 0; } -Original Message- From: meep-discuss-boun...@ab-initio.mit.edu [mailto:meep-discuss-boun...@ab-initio.mit.edu] On Behalf Of Kristian Medri Sent: February 25, 2010 12:10 PM To: meep-discuss@ab-initio.mit.edu Subje

Re: [Meep-discuss] How to avoiding averaging when generating eps.h5?

2010-02-25 Thread Kristian Medri
Dear Xiaohua, I took a look at the post you refer to: http://thread.gmane.org/gmane.comp.science.electromagnetism.meep.general/712 /focus=726 which refers to line 192 in the oldest version of Meep: http://meep.sourcearchive.com/documentation/0.10/anisotropic__averaging_8cpp -source.html and took

Re: [Meep-discuss] 1D Fabry-Perot

2010-02-25 Thread Kristian Medri
00) { f.step(); p[i++] = f.get_field(c,vol.center()); } int num = do_harminv(p, ttot, f.dt, 0.8*w_midgap, 1.2*w_midgap, maxbands, amps, freq_re, freq_im); master_printf("frequency,amplitude,quality factor\n"); for (int i=0; imailto:meep-discuss-boun...@ab-initio.mit.

[Meep-discuss] Passing a variable to the eps funtion

2010-02-25 Thread Kristian Medri
Dear Meep community, In my main{} I can call: structure s(v,eps_struct(dielectricarray),pml(dpml)); where: double eps_struct(const vec &p) I would like to pass a variable: structure s(v,eps_struct(dielectricarray),pml(dpml)); where: double eps_struct(const vec &p, double diearray[401][401]) If

Re: [Meep-discuss] epsilon function (c vs. libctl)

2010-02-18 Thread Kristian Medri
Using the command I posted to compile, the output directory lines work well now: http://thread.gmane.org/gmane.comp.science.electromagnetism.meep.general/288 1/focus=3259 -Original Message- From: Kristian Medri [mailto:kme...@doe.carleton.ca] Sent: December 7, 2009 11:04 AM To: '

Re: [Meep-discuss] About installation

2010-02-18 Thread Kristian Medri
-boun...@ab-initio.mit.edu [mailto:meep-discuss-boun...@ab-initio.mit.edu] On Behalf Of Kristian Medri Sent: September 23, 2009 4:52 PM To: meep-discuss@ab-initio.mit.edu Subject: Re: [Meep-discuss] About installation 1. Follow up regarding mpd: http://www.mcs.anl.gov/research/projects/mpich2

Re: [Meep-discuss] yum update meep-mpi h5utils

2010-02-18 Thread Kristian Medri
Turns out my install scripts were almost .spec files which are used to create rpms: http://thread.gmane.org/gmane.linux.rpm.rpmforge.suggest/260/focus=292 -Original Message- From: Kristian Medri [mailto:kme...@doe.carleton.ca] Sent: February 1, 2010 1:37 PM To: 'meep-discu

[Meep-discuss] 1D Fabry-Perot

2010-02-08 Thread Kristian Medri
Dear Meep community, I would appreciate some input as to why the 1D Fabry-Perot only works with Ex. The code below is for the example from: http://ab-initio.mit.edu/wiki/index.php/Meep_C-plus-plus_Tutorial The tutorial states that "For a 1D system, Meep considers a computational cell along the z

[Meep-discuss] yum update meep-mpi h5utils

2010-02-01 Thread Kristian Medri
Our departmental use of yum update breaks my installs. Thus I'd like for it to include meep-mpi and h5utils. I have posted: http://lists.rpmforge.net/pipermail/suggest/2010-January/001264.html I have noted the following websites for more information about how to get this going: http://www.ibm.co

Re: [Meep-discuss] Python bindings for Meep released

2010-01-14 Thread Kristian Medri
I looked at the Python bindings when you first posted about them, thank-you for your effort. I have returned to them today since I have been trying to figure out whether there is a command such as "stop-when-fields-decayed" for the C++ interface. I was unable any reference to it in the C++ document

Re: [Meep-discuss] No such file or directory:usr/share/meep/meep.scm

2009-12-07 Thread Kristian Medri
Dear Ken, Any luck yet? The easiest way I found to try meep on a dedicated machine was using Ubuntu (a Debian-based Linux distribution) as per http://thread.gmane.org/gmane.comp.science.electromagnetism.meep.general/278 0 However, I no longer have any machine running Ubuntu since CentOS

Re: [Meep-discuss] epsilon function (c vs. libctl)

2009-12-07 Thread Kristian Medri
(dirname); fields f0(&s0); fields f(&s); f0.use_real_fields(); f.use_real_fields(); -Original Message- From: meep-discuss-boun...@ab-initio.mit.edu [mailto:meep-discuss-boun...@ab-initio.mit.edu] On Behalf Of Kristian Medri Sent: December 1, 2009 12:24 PM To: meep-discuss@a

Re: [Meep-discuss] epsilon function (c vs. libctl)

2009-12-01 Thread Kristian Medri
achieve. -Original Message- From: meep-discuss-boun...@ab-initio.mit.edu [mailto:meep-discuss-boun...@ab-initio.mit.edu] On Behalf Of Kristian Medri Sent: November 27, 2009 5:19 PM To: meep-discuss@ab-initio.mit.edu Subject: Re: [Meep-discuss] epsilon function (c vs. libctl) I would have found

Re: [Meep-discuss] epsilon function (c vs. libctl)

2009-11-27 Thread Kristian Medri
I would have found the whole code helpful instead of a snippet and thus am posting my version of holey-wvg-cavity.cpp: #include "meep.hpp" using namespace meep; /* Based on holey-wvg-cavity.ctl, etc. from the Meep Tutorial */ //Some parameters to describe the geometry: const double epswg = 13; /

Re: [Meep-discuss] not compiled with HDF5, required for HDF5 output

2009-11-10 Thread Kristian Medri
Dear Ken, I have not seen any reply to your question thus I figured that I would point you to what it took to get MEEP working on CentOS, which is similar to RedHat: http://thread.gmane.org/gmane.comp.science.electromagnetism.meep.general/288 1/focus=2884 _ From: meep-discuss-b

Re: [Meep-discuss] Adaptive Mesh Refinement in MEEP

2009-11-05 Thread Kristian Medri
e, we may also implement support for different chunks with different resolution, to allow nonuniform spatial resolution." http://ab-initio.mit.edu/wiki/index.php/Meep_C-plus-plus_Reference Also, I have found the following useful: http://www.glenstark.net/about Sincerely, Kristian Medri, B. A.

Re: [Meep-discuss] MPB's bug ?

2009-11-02 Thread Kristian Medri
http://ab-initio.mit.edu/cgi-bin/mailman/listinfo/mpb-discuss as per: http://ab-initio.mit.edu/wiki/index.php/MIT_Photonic_Bands _ From: meep-discuss-boun...@ab-initio.mit.edu [mailto:meep-discuss-boun...@ab-initio.mit.edu] On Behalf Of zhanyaohui Sent: November 1, 2009 12:3

Re: [Meep-discuss] About installation

2009-09-23 Thread Kristian Medri
--Original Message- From: meep-discuss-boun...@ab-initio.mit.edu [mailto:meep-discuss-boun...@ab-initio.mit.edu] On Behalf Of Kristian Medri Sent: September 4, 2009 11:31 AM To: meep-discuss@ab-initio.mit.edu Subject: Re: [Meep-discuss] About installation The easiest install is on Ubuntu - fe

Re: [Meep-discuss] About installation

2009-09-04 Thread Kristian Medri
The easiest install is on Ubuntu - feel free to follow the quickstart script I posted. I do not know of anyone who has gotten the software to work properly in cygwin. I have since moved on to CentOS since that is what is used on our network. Running meep on multiple cores on one machine using the

Re: [Meep-discuss] losing mode points problem in band calculation

2009-07-17 Thread Kristian Medri
Full link: http://ab-initio.mit.edu/wiki/index.php/Meep_Tutorial/Band_diagram%2C_resona nt_modes%2C_and_transmission_in_a_holey_waveguide -Original Message- From: meep-discuss-boun...@ab-initio.mit.edu [mailto:meep-discuss-boun...@ab-initio.mit.edu] On Behalf Of Steven G. Johnson Sent: Ju

[Meep-discuss] Draft Meep install script for Cygwin

2009-07-08 Thread Kristian Medri
Below is a draft Meep install script for Cygwin. To reproduce the common Cygwin Meep make check segmentation faults run the script on a fresh Cygwin install. I would appreciate hearing from someone who has solved this problem. Sincere thanks! #!/bin/bash # \begin(README) # cygwinmeepinstaller ve