Dear Meep users,
I am trying to calculate transmittance spectrum using parallel Meep
with python interface.
When flux data are processed with 'save_flux' or 'get_fluxes' methods,
all the MPI processes seem to get whole data and use huge memory.
Is this behavior normal?
Please let me know if
lation command is
$ conda create -n pmp -c chogan -c conda-forge pymeep-parallel nomkl
Sorry for the confusion.
Chris
On Sun, May 13, 2018 at 11:13 PM, Munehiro Nishida
<mnish...@hiroshima-u.ac.jp <mailto:mnish...@hiroshima-u.ac.jp>> wrote:
Dear Chris,
I installed your pymee
Dear Chris,
I installed your pymeep-parallel package using
$ conda |create -n pmp -c chogan -c defaults -c conda-forge pymeep-parallel|
and found "HDF5 library version mismatched error" at runtime
(Headers are 1.10.1, library is 1.10.2).
The error could be circumvented by setting
ng to use intel mkl, which is incompatible with libfftw3_mpi
[https://github.com/stevengj/mpb/issues/8].
Using openblas instead, everything seems to be fine.
With best regards,
Munehiro Nishida
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c.py:
--
mpirun noticed that process rank 0 with PID 0 on node gromit exited on
signal 11 (Segmentation fault).
------
FAIL tests/wvg_src.py (exit status: 139)
With be
Dear Prof. Johnson,
I have submitted a pull request.
This is my first time to submit a pull request,
so please let me know if there are any mistakes.
Best regards,
Munehiro Nishida
On Sun Aug 30 2015 05:35:05 GMT+0900 (JST)
Steven G. Johnson stevenj@gmail.com wrote:
Munehiro,
Thanks
Dear P.Hoang,
This seems to be the same problem as I pointed out before.
The following patch may fix it.
Munehiro Nishida
diff -Nur meep-1.3.orig/src/near2far.cpp meep-1.3/src/near2far.cpp
--- meep-1.3.orig/src/near2far.cpp 2015-04-01 00:45:50.0 +0900
+++ meep-1.3/src/near2far.cpp
There seems to be a bug in near2far.cpp.
The number nfreq always becomes 1 in the output file.
The following patch may fix the problem.
Munehiro Nishida
diff -Nur meep-1.3.orig/src/near2far.cpp meep-1.3/src/near2far.cpp
--- meep-1.3.orig/src/near2far.cpp 2015-04-01 00:45:50.0 +0900
There seems to be a bug in bicgstab.cpp in meep-1.2.
Without the following patch physical.cpp test gives nan ratio, although
make check passed.
Best regards
Munehiro
--- bicgstab.cpp.orig 2012-12-18 22:52:19.159110261 +0900
+++ bicgstab.cpp2012-12-18 22:53:44.655994596 +0900
@@ -84,7
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