[Meep-discuss] Field blowing out

2008-09-22 Thread Seong Kyu Kim
consider any mathematical bug or limitation of meep? Seong Kyu Kim, professor Department of Chemistry Sungkyunkwan University Suwon, 440-746 Korea layer2-spec.ctl Description: Binary data ___ meep-discuss mailing list meep-discuss@ab-initio.mit.edu

[Meep-discuss] output-real-field-function is now worki ng

2008-06-04 Thread Seong Kyu Kim
. Thanks for all. Seong Kyu Kim ; - ; Lattice and Boundaries -- (define-param sx 0.1) ; the length of x of the lattice (define-param sy 0.1) ; the length of y of the

[Meep-discuss] help with output-field function

2008-06-03 Thread Seong Kyu Kim
file, the (output-field-function) part of the code is copied from discussion archives of Jan 15 2007 (by Prof. Johnson). This run produces ex-**.h5 and ey-**.h5 O.K. But its sum files esum-**.h5 have only zeros. I cannot figure out what is wrong. Could someone help me. I am desperate.

[Meep-discuss] Averaging E2 over time period

2008-06-02 Thread Seong Kyu Kim
Dear Meep users: I am trying to get the distribution of time-averaged E square. (I believe many users will look for this feature.) After modifying previously posted ctl files for output-field-function (Jan. 15, 2007) and for summing h5 files, I wrote an example ctl file below. But the result e

[Meep-discuss] Normalizing transmittace flux

2008-06-01 Thread Seong Kyu Kim
. Should we used a fixed run time for both runs, like (run-until 10)? Seong Kyu Kim, Professor Department of Chemistry Sungkyunkwan University Suwon, 440-746 Korea___ meep-discuss mailing list meep-discuss@ab-initio.mit.edu http://ab-initio.mit.edu/cgi-bin

[Meep-discuss] meep-mpi installation on nonstandard di rectory

2008-05-20 Thread Seong Kyu Kim
Dear meep users: I still do have problems in installing meep-mpi into a cluster Linux PC which I do not have root priviledge. Therefore, I tried to install into my local directory (/home/skkim/local) and the system had mpi executables in /usr/local/mpich. Several days ago, I posted difficultie

Re: [Meep-discuss] mpi-meep installation problems

2008-05-15 Thread Seong Kyu Kim
for gen-ctl-io... gen-ctl-io checking for ctl_get_vector3 in -lctl... yes checking ctl.h usability... no checking ctl.h presence... no checking for ctl.h... no configure: error: Couldn't find the libctl header. - Original Message - From: "Seong Kyu Kim" <[EMAIL PROT

[Meep-discuss] mpi-meep installation problems

2008-05-15 Thread Seong Kyu Kim
such as /usr/bin/pkg-config and fails to find them. (3) The message says that GNU GSL library and FFTW library are missing. I attached the config.log (where hdf5 related messages will be gone if I configure with CPPFLAGS="-I/home/skkim/local/include". Help me please. Thanks in ad

Re: [Meep-discuss] installing parallel hdf5 into nonstanda rd directory

2008-05-14 Thread Seong Kyu Kim
t enough. Seong Kyu Kim - Original Message ----- From: "Seong Kyu Kim" <[EMAIL PROTECTED]> To: meep-discuss@ab-initio.mit.edu Date: 2008-05-15 04:30:17 Subject: Re: [Meep-discuss]installing parallel hdf5 into nonstandard directory I tried "./configure --prefix=$HOME/

Re: [Meep-discuss] installing parallel hdf5 into nonstanda rd directory

2008-05-14 Thread Seong Kyu Kim
I tried "./configure --prefix=$HOME/local CC=mpicc in compiling both hdf5 and h5utils in addition to commands in the above. But still it did not work. Here are lsome ines of messages when I type "make" after " "./configure --prefix=$HOME/local CC=mpicc " to complie for h5utils. make all-am mak

Re: [Meep-discuss] installing parallel hdf5 into nonstanda rd directory

2008-05-14 Thread Seong Kyu Kim
Here I attached the config.log for hdf5 for the above problem. Seong Kyu Kim - Original Message - From: "Seong Kyu Kim" <[EMAIL PROTECTED]> To: meep-discuss@ab-initio.mit.edu Date: 2008-05-14 11:51:16 Subject: [Meep-discuss] installing parallel hdf5 into nonstandard direc

[Meep-discuss] installing parallel hdf5 into nonstanda rd directory

2008-05-13 Thread Seong Kyu Kim
ay. When I typed % make all, it gave a whole bunch of error messages implying hdf5 is not found. Can someone help me with this problem? Seong Kyu Kim, professor Department of Chemistry Sungkyunkwan University Suwon, 440-746 Korea ___ meep-discuss ma

Re: [Meep-discuss] dpwr and epsilon

2008-02-12 Thread Seong Kyu Kim
eb 11, 2008, at 1:19 PM, Seong Kyu Kim wrote: > (1) dwpr is supposed to write E*D/2 or epsilonE*E, whose time > average under vacuum should give 1/4. However, the time averaged > dwpr gives almost zero in vacuum area? (I get the same result if I > accumulated many h5 files

[Meep-discuss] dpwr and epsilon

2008-02-11 Thread Seong Kyu Kim
Dear meep helpers: In my previous posting dwpr was the miss-typing of dpwr. I post again. I had a problem with accumulating outputs over the run time. After all, the problem was solved with the ctl code provided by prof. Steven G. Johnson (in response to Florencio Garcia) a few days ago. I tr

[Meep-discuss] dpwr and epsilon

2008-02-11 Thread Seong Kyu Kim
Dear meep helpers: This is my second posting. I had a problem with accumulating outputs over the run time. After all, the problem was solved with the ctl code provided by prof. Steven G. Johnson (in response to Florencio Garcia) a few days ago. I truly appreciate it. With the code, I was abl

[Meep-discuss] Symmetry and Boundary condition

2008-02-11 Thread Seong Kyu Kim
. I would appreciate your advice. Seong Kyu Kim ; Lattice and Boundaries -- (define-param sx 1.0) ; the length of x of the lattice, not including PML (define-param sy 1.0) ; the length of y of the lattice, not including PML (define-param sz 1.0