Dear Sanchit,
I suppose, there will be not only one frequency in 
the flux spectrum when you are using CW source, even
if you don't use the (width ...) parameter in you ctl 
file (of course if you move in this way, in the c++ situation
is the same I suppose). Without ctl file or source code
you are using I cannot see the light. Why "you are not able to use the 
"add-flux" attribute to the "flux-region"?

BR,
Alexandr.

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