I start from an up-to-date fedora core 4 (except that I've not
rebooted lately, so I have newer kernels than I'm now running).
This includes
mysql-4.1.16-1.FC4.1.i386.rpm
mysql-devel-4.1.16-1.FC4.1.i386.rpm
mysql-server-4.1.16-1.FC4.1.i386.rpm
mysqlclient10-3.23.58-6.i386.rpm

I'm trying to follow directions in
http://dev.mysql.com/doc/refman/4.1/en/unix-post-installation.html

Transcript:
 # su mysql
 bash-3.00$ cd /var/lib
 bash-3.00$ mysql_install_db 
 Installing all prepared tables
 Fill help tables
 ERROR: 1064  You have an error in your SQL syntax; check the manual that 
corresponds to your MySQL server version for the right syntax to use near '' at 
line 1
 060514 21:39:56 [ERROR] Aborting

 060514 21:39:56 [Note] /usr/libexec/mysqld: Shutdown complete


 WARNING: HELP FILES ARE NOT COMPLETELY INSTALLED!
 The "HELP" command might not work properly


 To start mysqld at boot time you have to copy support-files/mysql.server
 to the right place for your system

 PLEASE REMEMBER TO SET A PASSWORD FOR THE MySQL root USER !
 To do so, start the server, then issue the following commands:
 /usr/bin/mysqladmin -u root password 'new-password'
 /usr/bin/mysqladmin -u root -h don-eve.dyndns.org password 'new-password'
 See the manual for more instructions.

 You can start the MySQL daemon with:
 cd /usr ; /usr/bin/mysqld_safe &

 You can test the MySQL daemon with the benchmarks in the 'sql-bench' directory:
 cd sql-bench ; perl run-all-tests

 Please report any problems with the /usr/bin/mysqlbug script!

 The latest information about MySQL is available on the web at
 http://www.mysql.com
 Support MySQL by buying support/licenses at https://order.mysql.com
 bash-3.00$

What's the error in syntax?
I'm now simply following the directions above that say to use mysqlbug
and tell you what I did.
I can't tell for sure,but it looks like I'm supposed to just mail this buffer. 
That's another problem.  I seem to be in emacs (not the right one) and not
in a mail buffer ... I'll try to mail it anyway...

>Description:
        <precise description of the problem (multiple lines)>
>How-To-Repeat:
        <code/input/activities to reproduce the problem (multiple lines)>
>Fix:
        <how to correct or work around the problem, if known (multiple lines)>

>Submitter-Id:  <submitter ID>
>Originator:    root
>Organization:
 <organization of PR author (multiple lines)>
>MySQL support: [none | licence | email support | extended email support ]
>Synopsis:      <synopsis of the problem (one line)>
>Severity:      <[ non-critical | serious | critical ] (one line)>
>Priority:      <[ low | medium | high ] (one line)>
>Category:      mysql
>Class:         <[ sw-bug | doc-bug | change-request | support ] (one line)>
>Release:       mysql-4.1.16 (Source distribution)

>C compiler:    i386-redhat-linux-gcc (GCC) 4.0.2 20051125 (Red Hat 4.0.2-8)
>C++ compiler:  i386-redhat-linux-g++ (GCC) 4.0.2 20051125 (Red Hat 4.0.2-8)
>Environment:
        <machine, os, target, libraries (multiple lines)>
System: Linux don-eve.dyndns.org 2.6.15-1.1831_FC4 #1 Tue Feb 7 13:37:42 EST 
2006 i686 i686 i386 GNU/Linux
Architecture: i686

Some paths:  /usr/bin/perl /usr/bin/make /usr/bin/gmake /usr/bin/gcc /usr/bin/cc
GCC: Using built-in specs.
Target: i386-redhat-linux
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man 
--infodir=/usr/share/info --enable-shared --enable-threads=posix 
--enable-checking=release --with-system-zlib --enable-__cxa_atexit 
--disable-libunwind-exceptions --enable-libgcj-multifile 
--enable-languages=c,c++,objc,java,f95,ada --enable-java-awt=gtk 
--with-java-home=/usr/lib/jvm/java-1.4.2-gcj-1.4.2.0/jre 
--host=i386-redhat-linux
Thread model: posix
gcc version 4.0.2 20051125 (Red Hat 4.0.2-8)
Compilation info: CC='i386-redhat-linux-gcc'  CFLAGS='-O2 -g -pipe 
-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -m32 -march=i386 -mtune=pentium4 
-fasynchronous-unwind-tables -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 
-D_LARGEFILE_SOURCE -fno-strict-aliasing'  CXX='i386-redhat-linux-g++'  
CXXFLAGS='-O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -m32 -march=i386 
-mtune=pentium4 -fasynchronous-unwind-tables -D_GNU_SOURCE 
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -fno-strict-aliasing -fno-rtti 
-fno-exceptions'  LDFLAGS=''  ASFLAGS=''
LIBC: 
lrwxrwxrwx  1 root root 13 Mar 28 06:49 /lib/libc.so.6 -> libc-2.3.6.so
-rwxr-xr-x  1 root root 1481808 Mar 14 05:31 /lib/libc-2.3.6.so
-rw-r--r--  1 root root 2519920 Mar 14 05:00 /usr/lib/libc.a
-rw-r--r--  1 root root 238 Mar 14 04:26 /usr/lib/libc.so
lrwxrwxrwx  1 root root 10 Nov 19 07:11 /usr/lib/libc-client.a -> c-client.a
lrwxrwxrwx  1 root root 20 Nov 19 07:11 /usr/lib/libc-client.so -> 
libc-client.so.2004g
-rwxr-xr-x  1 root root 800272 Dec  1 11:58 /usr/lib/libc-client.so.0
-rwxr-xr-x  1 root root 828604 Nov 17 05:25 /usr/lib/libc-client.so.2004g
Configure command: ./configure '--build=i386-redhat-linux' 
'--host=i386-redhat-linux' '--target=i386-redhat-linux-gnu' '--program-prefix=' 
'--prefix=/usr' '--exec-prefix=/usr' '--bindir=/usr/bin' '--sbindir=/usr/sbin' 
'--sysconfdir=/etc' '--datadir=/usr/share' '--includedir=/usr/include' 
'--libdir=/usr/lib' '--libexecdir=/usr/libexec' '--localstatedir=/var' 
'--sharedstatedir=/usr/com' '--mandir=/usr/share/man' 
'--infodir=/usr/share/info' '--with-readline' '--with-vio' '--with-openssl' 
'--without-debug' '--enable-shared' '--with-bench' 
'--localstatedir=/var/lib/mysql' 
'--with-unix-socket-path=/var/lib/mysql/mysql.sock' '--with-mysqld-user=mysql' 
'--with-extra-charsets=all' '--with-innodb' '--with-isam' '--with-berkeley-db' 
'--enable-local-infile' '--enable-large-files=yes' '--enable-largefile=yes' 
'--enable-thread-safe-client' '--disable-dependency-tracking' 
'--with-named-thread-libs=-lpthread' 'CFLAGS=-O2 -g -pipe 
-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -m32 -march=i386 -mtune=p
 entium4 -fasynchronous-unwind-tables -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 
-D_LARGEFILE_SOURCE -fno-strict-aliasing' 'CXXFLAGS=-O2 -g -pipe 
-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -m32 -march=i386 -mtune=pentium4 
-fasynchronous-unwind-tables -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 
-D_LARGEFILE_SOURCE -fno-strict-aliasing -fno-rtti -fno-exceptions' 'FFLAGS=-O2 
-g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -m32 -march=i386 -mtune=pentium4 
-fasynchronous-unwind-tables' 'build_alias=i386-redhat-linux' 
'host_alias=i386-redhat-linux' 'target_alias=i386-redhat-linux-gnu'


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