Re: [Mzmine-devel] Odd masses using converted Agilent ToF data

2011-11-10 Thread Thomas McGrew
Michael, There was a problem with the reading of 64 bit data from mzXML in mzMine 2.2. I submitted a patch to fix this which was included in version 2.3. Updating to the latest version should fix this problem. Thomas McGrew Data Analyst/Programmer Bindley Bioscience Center @ Purdue University

Re: [Mzmine-devel] Thermo raw files and Linux

2011-11-10 Thread Gavin Blackburn
Hi Angela, I would suggest msconvert as readw is no longer supported. Msconvert is part of Proteowizard which can be downloaded here: http://proteowizard.sourceforge.net/downloads.shtml It is possible to run the windows version on msconvert under WINE on Linux but to be honest you are best hav

Re: [Mzmine-devel] Thermo MSFileReader on 64 bit OS

2011-11-10 Thread P. Lee Ferguson
Hi Tomas, Thanks for the information. In the end, I was able to get Java3D working on my machine - I had to copy some DLLs and other files from one folder to another (as mentioned in a previous post in this discussion group) and then update my graphics driver. All is well now! Thanks, Lee O

[Mzmine-devel] Odd masses using converted Agilent ToF data

2011-11-10 Thread Michael Dickinson
Hi, I hope this is the right email to ask this question. I am currently using MZmine 2.2 and have imported mzXML files converted from Agilent ToF.d files. I have used pwiz file conversion tool with and without a peak picker filter (Binary encoding precision is set to 64bit). However when I come