Re: [Mzmine-devel] Time unit in MZMine?

2011-12-20 Thread Zhang, Zhongqi
Thank you very much! ZZ From: Tomas Pluskal [mailto:plus...@oist.jp] Sent: Tuesday, December 20, 2011 5:43 PM To: Developer discussion Cc: Zhang, Zhongqi Subject: Re: [Mzmine-devel] Time unit in MZMine? Hi Zhongqi, You are right that there is some confusion in the retention time units used. I

Re: [Mzmine-devel] Time unit in MZMine?

2011-12-20 Thread Tomas Pluskal
Hi Zhongqi, You are right that there is some confusion in the retention time units used. I will fix this for the next MZmine release (2.5). I assume you set the "Retention time formatting" to "Minutes" in the MZmine Preferences dialog. Then all the tolerances should be considered in minutes, inc

Re: [Mzmine-devel] Process MS files by MZmine

2011-12-20 Thread Tomas Pluskal
Hi Angela, I don't understand this sentence: "I'm processing MS spectra (so RT is not the main parameter)" What do you mean by RT is not the main parameter? Tomas On Dec 16, 2011, at 7:10 PM, a.ma...@studenti.unisa.it wrote: > Dear MZmine team, > I've 8 MS spectra (ESI/(LIT)MS-Thermo) to comp

Re: [Mzmine-devel] outofmemoryerror: gc overhead

2011-12-20 Thread Tomas Pluskal
Hi Martin, David, If the error is reproducible, I would like to take a look at it in detail. But I will need your cooperation. Could you prepare a ZIP archive of your raw files, and send it to me e.g. via rapidshare.com, dropbox.com or some other sharing website? Also, please include the exact s

[Mzmine-devel] outofmemoryerror: gc overhead

2011-12-20 Thread Martin Wagner
Hej MZmine team, It appears I am having a similar problem like David Lyon (posted on 2011-12-14). I have run some environmental samples on an LTQ Velos in full scan, data-dependent MSn and PDA. The size of the raw files is circa 180 MB in the negative mode and 40 MB in positive ionization. I a