Re: [Mzmine-devel] Source fragmentation identification

2014-09-12 Thread Tomas Pluskal
Dear Tim, In the way the algorithm was designed, the lower mass is always considered to be the parent and the higher mass is considered to be the adduct. That's why id doesn't work with negative adduct masses. However, since your usage is plausible (although you're not exactly searching for "a

[Mzmine-devel] Source fragmentation identification

2014-09-11 Thread Garrett,Timothy J
I want to include a search for source induced fragments in mzmine. I tried adding a loss of water or ammonia in the adduct search box, but none of the source fragments I know of where identified. 1. I have Mzmine 2.11 installed on Mac OS X, 64 bit; I’m running Java version 1.6.0_65 2. Default