[OpenBabel-Devel] Quadruple bond in SMILES

2009-11-25 Thread Chris Morley
I see that a quadruple bond, $, is included in the Open Smiles Specification http://www.opensmiles.org/spec/open-smiles-3-input.html#3.2 Is there any reason why it shouldn't be implemented in OpenBabel? It's not that I need a quadruple bond, but in extending the query string in the fastsearch c

Re: [OpenBabel-Devel] Quadruple bond in SMILES

2009-11-25 Thread Noel O'Boyle
Can OB handle quadruple bonds okay? 2009/11/25 Chris Morley : > I see that a quadruple bond, $, is included in the Open Smiles > Specification http://www.opensmiles.org/spec/open-smiles-3-input.html#3.2 > > Is there any reason why it shouldn't be implemented in OpenBabel? > > It's not that I need

Re: [OpenBabel-Devel] Quadruple bond in SMILES

2009-11-25 Thread Chris Morley
I think OB can handle quadruple bonds, in as much as you can set a bond order to 4. Bond order 5 is used for aromatic bonds. (MDL mol files use 4 for aromatic). Or do you know differently? Chris Noel O'Boyle wrote: > Can OB handle quadruple bonds okay? > > 2009/11/25 Chris Morley : >> I see t

[OpenBabel-Devel] [ openbabel-Bugs-2903926 ] CML triple bond not recognised if specified as T

2009-11-25 Thread SourceForge.net
Bugs item #2903926, was opened at 2009-11-25 17:57 Message generated for change (Tracker Item Submitted) made by dan2097 You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=428740&aid=2903926&group_id=40728 Please note that this message will contain a full copy of the c