Re: [OpenBabel-Devel] aromaticity detection problems in charged heterocycles (e.g. pyridinium)

2012-10-01 Thread Paolo Tosco
Dear Reinis and dear all, actually the aromaticity detection problem is only raised when dealing with charged heterocyclic systems with formats which do not support explicit formal charges (e.g., MOL2), while there are no problems with SDF and MOL files. I was initially misled about this and I

Re: [OpenBabel-Devel] Getting 2.3.2 out the door

2012-10-01 Thread Reinis Danne
Hi! Nice to see it finally coming. Before release it would be good to check that we are not breaking ABI. There were some such commits in trunk. I'm looking into improving kekulization trough graph theory as discussed previously, but I'm yet to understand how exactly maximum matching or flow algo

[OpenBabel-Devel] Getting 2.3.2 out the door

2012-10-01 Thread Geoffrey Hutchison
I've merged in basically everything in trunk to the 2.3 branch. There are some depiction fixes and the ASCII painter that Noel committed remaining, as far as I can tell. Noel, please either merge these to the branch yourself, or send me a patch. I'm not sure I feel qualified to cut and paste the