Re: [OpenBabel-Devel] Many test exception on Mac OSX with -DCMAKE_BUILD_TYPE=Debug

2016-02-08 Thread Noel O'Boyle
Missing Eigen. On 8 February 2016 at 13:28, David van der Spoel wrote: > Hi, > > if I compiled OB with -DCMAKE_BUILD_TYPE=Debug on my mac (OSX Mavericks, > gcc 4.9) many tests fail with > 4/150 Test #4: test_align_4 .***Exception: Other > 6.57 sec

Re: [OpenBabel-Devel] bondtyp.txt

2016-02-08 Thread David van der Spoel
On 05/02/16 20:09, Geoffrey Hutchison wrote: > Strange. Can you send the bondtyp.txt or post it on GitHub? > > Thanks, > -Geoff Is it possible to run a test in the debugger? > >> On Feb 5, 2016, at 9:54 AM, Mohammad Mehdi Ghahremanpour >> wrote: >> >> Hello, >> >> I

Re: [OpenBabel-Devel] Minimum version of MSVC for Open Babel master?

2016-02-08 Thread Noel O'Boyle
The inttypes.h you mentioned is in the include folder. The binaries for the C libraries (e.g. libxml) are not specific to any MSVC. There is a C++ binary for libjson - this was after I moved to MSVC2012. You can just skip the json formats or else you will need to rebuild the binary yourself. If

Re: [OpenBabel-Devel] Many test exception on Mac OSX with -DCMAKE_BUILD_TYPE=Debug

2016-02-08 Thread David van der Spoel
On 08/02/16 15:46, Geoffrey Hutchison wrote: >> if I compiled OB with -DCMAKE_BUILD_TYPE=Debug on my mac (OSX Mavericks, >> gcc 4.9) many tests fail with > > Why are you using gcc-4.9 on Mavericks? I don't think that's a supported > compiler. > > I don't have a problem compiling with Debug or

Re: [OpenBabel-Devel] Many test exception on Mac OSX with -DCMAKE_BUILD_TYPE=Debug

2016-02-08 Thread David Lonie
No idea what's happening there, but you can run ctest with -V to see the process output for the failing tests. Dave On Mon, Feb 8, 2016 at 8:28 AM, David van der Spoel wrote: > Hi, > > if I compiled OB with -DCMAKE_BUILD_TYPE=Debug on my mac (OSX Mavericks, > gcc 4.9) many

Re: [OpenBabel-Devel] Many test exception on Mac OSX with -DCMAKE_BUILD_TYPE=Debug

2016-02-08 Thread David van der Spoel
On 08/02/16 14:37, David Lonie wrote: > No idea what's happening there, but you can run ctest with -V to see > the process output for the failing tests. Thanks, that helps a bit. Now I get 5: Test command: /Users/spoel/GG/openbabel-dev/build/bin/test_runner "aligntest" "5" 5: Environment

[OpenBabel-Devel] Many test exception on Mac OSX with -DCMAKE_BUILD_TYPE=Debug

2016-02-08 Thread David van der Spoel
Hi, if I compiled OB with -DCMAKE_BUILD_TYPE=Debug on my mac (OSX Mavericks, gcc 4.9) many tests fail with 4/150 Test #4: test_align_4 .***Exception: Other 6.57 sec Start 5: test_align_5 5/150 Test #5: test_align_5 .***Exception:

Re: [OpenBabel-Devel] Many test exception on Mac OSX with -DCMAKE_BUILD_TYPE=Debug

2016-02-08 Thread Geoffrey Hutchison
> if I compiled OB with -DCMAKE_BUILD_TYPE=Debug on my mac (OSX Mavericks, > gcc 4.9) many tests fail with Why are you using gcc-4.9 on Mavericks? I don't think that's a supported compiler. I don't have a problem compiling with Debug or Release using Apple Clang. In principal, it's fine, but