Re: [OpenBabel-Devel] 2D SVG depiction

2009-11-24 Thread Igor Filippov
I cannot say for ChemAxon. My own understanding is that wholesale use of their list "as is" is probably protected. On the other hand the abbreviations themselves cannot be copyrighted and nothing should prohibit one from double-checking your own list against entries in rightName.abbrevgroup - provi

Re: [OpenBabel-Devel] 2D SVG depiction

2009-11-24 Thread Geoffrey Hutchison
On Nov 23, 2009, at 1:48 PM, Igor Filippov wrote: > http://www.chemaxon.com/marvin/examples/applets/sketch/rightName.abbrevgroup > There is also superatom.txt file which comes with OSRA of course :) Do you know if ChemAxon is willing to make this public domain or BSD-licensed? Chris is right --

Re: [OpenBabel-Devel] 2D SVG depiction

2009-11-23 Thread Chris Morley
Geoffrey Hutchison wrote: >> In this code OBDepict draws the molecule and an abstract class >> OBPainter does the rendering. There are three derived classes, all of >> which use an external library for the graphics. > > Do we need to add Cmake tests for the external libraries? I assume "yes." T

Re: [OpenBabel-Devel] 2D SVG depiction

2009-11-23 Thread Geoffrey Hutchison
> http://www.chemaxon.com/marvin/examples/applets/sketch/rightName.abbrevgroup > There is also superatom.txt file which comes with OSRA of course :) I think Chris already borrowed superatom.txt. :-) Thanks for the pointer to the Marvin list. I think I can probably adapt the ChemDraw list based o

Re: [OpenBabel-Devel] 2D SVG depiction

2009-11-23 Thread Igor Filippov
http://www.chemaxon.com/marvin/examples/applets/sketch/rightName.abbrevgroup There is also superatom.txt file which comes with OSRA of course :) Igor On Mon, 2009-11-23 at 13:25 -0500, Geoffrey Hutchison wrote: > Chris, > > First off, this is great. Thanks to both you and Tim. (I hear he's bee

Re: [OpenBabel-Devel] 2D SVG depiction

2009-11-23 Thread Geoffrey Hutchison
Chris, First off, this is great. Thanks to both you and Tim. (I hear he's been working on a 2D editor using Open Babel.) > In this code OBDepict draws the molecule and an abstract class > OBPainter does the rendering. There are three derived classes, all of > which use an external library for

Re: [OpenBabel-Devel] 2D SVG depiction

2009-11-23 Thread Noel O'Boyle
2009/11/23 Chris Morley : > I forgot to say that there is an example output file from svgformat at > http://gaseq.co.uk/OB/49mols.xml > These are 49 of Noel's depiction test set, > http://publishious.org/site_media/blog/dataset.sdf.gz, using the > original coordinates. > > (The file is .xml rather

Re: [OpenBabel-Devel] 2D SVG depiction

2009-11-23 Thread Chris Morley
I forgot to say that there is an example output file from svgformat at http://gaseq.co.uk/OB/49mols.xml These are 49 of Noel's depiction test set, http://publishious.org/site_media/blog/dataset.sdf.gz, using the original coordinates. (The file is .xml rather than .svg otherwise it was not served

[OpenBabel-Devel] 2D SVG depiction

2009-11-22 Thread Chris Morley
OB has no 2D depiction built in as yet. Craig has some apparently compatible code running on the emolecules site and Tim has some nicely written undeployed classes for 2D depiction in http://github.com/timvdm/OBDepict/tree/master . In this code OBDepict draws the molecule and an abstract class