Re: [OpenBabel-Devel] OpenBabel MMFF94 validation set.

2012-07-05 Thread ovalerio
Hi Tim, Thanks for all the insights that you share with me in your last email. It has been of great help. On 02.07.2012 21:58, Tim Vandermeersch wrote: > This is in accordance with what I said above. However if you really > want to improve performance a better approach would be to implement > cu

Re: [OpenBabel-Devel] OpenBabel MMFF94 validation set.

2012-07-03 Thread ovalerio
> See test/mmff94validate.cpp and the comments at the top. The easiest > to grab is: > > MMFF94_dative.mol2 > MMFF94_opti.log Okay I will definitely have a look at that one. Thanks. > > surprising. I'll be curious what you find. (You can also use > obminimize on _dative.mol2 as well if yo

Re: [OpenBabel-Devel] OpenBabel MMFF94 validation set.

2012-07-02 Thread Tim Vandermeersch
Hi, On Mon, Jul 2, 2012 at 10:09 PM, ovalerio wrote: > >> See test/mmff94validate.cpp and the comments at the top. The easiest >> to grab is: >> >> MMFF94_dative.mol2 >> MMFF94_opti.log > > > Okay I will definitely have a look at that one. Thanks. > >> >> surprising. I'll be curious what

Re: [OpenBabel-Devel] OpenBabel MMFF94 validation set.

2012-07-01 Thread Geoff Hutchison
> I found two slightly different datasets: MMFF94_dative.mol2 and > MMFF94_hypervalent.mol2 . Which one of them is the one I should be > using? > … See test/mmff94validate.cpp and the comments at the top. The easiest to grab is: MMFF94_dative.mol2 MMFF94_opti.log > tool(I am using OPro

[OpenBabel-Devel] OpenBabel MMFF94 validation set.

2012-07-01 Thread ovalerio
Hi list, Good evening to all of you. Once again I need to ask you about something related to the forcefields and in particular MMFF94. I looked at the validation for the MMFF94 OpenBabel implementation that Tim uploaded at http://home.scarlet.be/timvdm/MMFF94_validation_output.gz I found the