Re: [Open Babel] Obminimize

2009-11-20 Thread Geoffrey Hutchison
> Could anyone help me to get energy minimal value for more than 2 > decimal places, i need atleast 5 decimal places. For example I highly doubt the molecular mechanics energies have more than 2-3 decimal places of accuracy in either the model or implementation. (Yes, the implementati

[Open Babel] Obminimize

2009-11-20 Thread Vinay M
Hi All,  Could anyone help me to get energy minimal value for more than 2 decimal places, i need atleast 5 decimal places. For example C O N J U G A T E   G R A D I E N T S STEPS = 2500 STEP n E(n)   E(n-1)        1  22.678  22.696   

Re: [Open Babel] New chemical software

2009-11-20 Thread Geoffrey Hutchison
Great! I just added it to the list of Open Babel projects. I hope you'll find some interested users, it certainly fits in with a number of interesting projects. Best regards, -Geoff -- Let Crystal Reports handle the repo

Re: [Open Babel] Open Babel Error in reading PDB file

2009-11-20 Thread Geoffrey Hutchison
On Nov 20, 2009, at 1:00 PM, Andrew Dalke wrote: > But OB only generates a warning for them, which seems acceptable. > (Though it would be nice to also know the line number of the problem.) I think we can arrange line numbers in the warning. :-) > Also, your suggestion "It would be more appli

Re: [Open Babel] Open Babel Error in reading PDB file

2009-11-20 Thread Andrew Dalke
On Nov 20, 2009, at 12:14 AM, Sheng-Hung Wang wrote: > The error messages are showing below: > -- > WARNING: Problems reading a PDB file > Problems reading a HETATM or ATOM record. > According to the PDB specification, > columns 77-78 should contain the e

[Open Babel] New chemical software

2009-11-20 Thread remy d1
Hi, I have just finished the 0.5 version of my new software "ChemAzTech". It uses the following softwares : - JChemPaint Applet, - MyChem, - JMol, - OpenBabel (+ OASA library) Thanks to everyone who developped these software. There are very usefull. (I hope there is no problem due to license (it

[Open Babel] Open Babel Error in reading PDB file

2009-11-20 Thread Sheng-Hung Wang
The error messages are showing below: -- WARNING: Problems reading a PDB file Problems reading a HETATM or ATOM record. According to the PDB specification, columns 77-78 should contain the element symbol of an atom. ---