Re: [Open Babel] Open Babel 2.3.0 and PDBQT format

2010-11-30 Thread Geoffrey Hutchison
On Nov 30, 2010, at 12:33 PM, ariste...@cbm.uam.es wrote: > Please, could you tell me the proper flag to import/export PDBQT files? -ipdbqt for input and -opdbqt for output. If the files have an extension of .pdbqt, it should also be automatically recognized without a flag. Hope that helps, -

[Open Babel] Open Babel 2.3.0 and PDBQT format

2010-11-30 Thread aristegui
A quick doubt about file formats... http://openbabel.org/wiki/Open_Babel_2.3.0#What.27s_New_from_2.2.3 "Import & Export: * DL-POLY CONFIG * FHIaims XYZ * PDBQT - Contributed by InhibOx" Please, could you tell me the proper flag to import/export PDBQT files? Thank you in advance. --

Re: [Open Babel] Retrieving both Kekule structures?

2010-11-30 Thread Igor Filippov [Contr]
I would be very interested in this too, if it's possible in a general case. Best regards, Igor On Tue, 2010-11-30 at 05:48 -0500, Hans De Winter wrote: > All, > > I'm using the OB C++ API and I wwas wondering whether there is a way > to retrieve bot Kekule structure from an aromatic system (if

[Open Babel] Retrieving both Kekule structures?

2010-11-30 Thread Hans De Winter
All, I'm using the OB C++ API and I wwas wondering whether there is a way to retrieve bot Kekule structure from an aromatic system (if there are two Kekule's)? For example, I would like to get access to both Kekule forms of the aromatic indole ( c1ccc2c(c1)[nH]cc2 ), hence [NH]1C=CC2=CC=CC

[Open Babel] iBabel 3.0 beta

2010-11-30 Thread christophersw...@btconnect.com
Hi, I just thought you might be interested in this http://homepage.mac.com/swain/Macinchem/page5/files/0c471ad275c23d0a798cc0cc5c428d07-649.html I've just finished porting iBabel to ApplescriptObjC and the first beta test is available. It requires Mac OS X 10.6 and openbabel 2.3. Cheers, Chri