Re: [Open Babel] PyPLIF - Another Open Babel related project

2012-04-04 Thread radifar
Hi Pascal, > What do you think of an additionnal score for comparing new ligands to > the reference? Let's say the reference has 2 interactions, and that > you have a new ligand with exactly the same 2 interactions and a third > interaction: this ligand would have a lower tanimoto score, but it >

Re: [Open Babel] [Chimera-users] UCSF Dock mol2 files

2012-04-04 Thread Maciek Wójcikowski
Maybe @COMMENT would be a better place for them? http://tripos.com/data/support/mol2.pdf Pozdrawiam, | Best regards, Maciek Wójcikowski mac...@wojcikowski.pl W dniu 4 kwietnia 2012 20:08 użytkownik Conrad Huang napisał: > Our approach to file formats in Chimera is to support the "native"

Re: [Open Babel] PyPLIF - Another Open Babel related project

2012-04-04 Thread radifar
Hello Pascal, > Great - I've been using the Marcou's C++ program. Works fine. > I don't use it so often, but I'll look at your version and try it when > I have some time - I'm not a good programmer, but it's, as you said, > much easier for me with python... Wow, great makes sure to check the curr

[Open Babel] Bls: Re: PyPLIF - Another Open Babel related project

2012-04-04 Thread radifar
gsgs -- Pada Rab, 4 Apr 2012 18:04 ICT Pascal Muller-3 [via Open Babel] menulis: > > >Hello, > >> I've just released  http://code.google.com/p/pyplif/ PyPLIF , a Python-based >> Protein-Ligand Interaction Fingerprinting which is using Open Babel library. > >Great -

Re: [Open Babel] PyPLIF - Another Open Babel related project

2012-04-04 Thread Pascal Muller
Hello, > I've just released  http://code.google.com/p/pyplif/ PyPLIF , a Python-based > Protein-Ligand Interaction Fingerprinting which is using Open Babel library. Great - I've been using the Marcou's C++ program. Works fine. I don't use it so often, but I'll look at your version and try it when