Re: [Open Babel] Copy format in Pybel

2012-11-09 Thread Maciek Wójcikowski
That was just a proof of concept piece of code. I wanted to process some molecules and try to leave them intact. Thanks for information. Pozdrawiam, | Best regards, Maciek Wójcikowski mac...@wojcikowski.pl 2012/11/8 Geoffrey Hutchison geo...@pitt.edu Is pybel suppose to support 'copy'

Re: [Open Babel] Alternative charge models using python bindings

2012-11-09 Thread Noel O'Boyle
On 8 November 2012 22:40, Casper Steinmann casper.steinm...@gmail.com wrote: Hi, The Open Babel API states that the QEq and QTPIE charge models are supported if Eigen is present. When compiling 2.3.1 with -DPYTHON_BINDINGS=ON and the cmake step tells me it has found Eigen2. if I request

Re: [Open Babel] conformer search

2012-11-09 Thread Geoffrey Hutchison
Can you be a bit more specific? Are you trying to use the command-line interface? If so, what version of Open Babel are you using? Older versions will only save one conformer. Thanks very much, -Geoff On Nov 5, 2012, at 9:01 AM, Ioanna Kalvari wrote: Hello, I am trying to generate