Re: [Open Babel] Openbabel svn python bindings build failure

2012-03-18 Thread Ken Smith
Many thanks Geoff Cmake (2.6 patch 4) was indeed the problem. I installed the latest version (2.8.7) and rebuilt. Everything OK now. Cheers, Ken On 18 Mar 2012, at 20:20, Geoff Hutchison wrote: I'm having trouble building the latest SVN release (trunk) of Openbabel (from scratch) on

[Open Babel] Using openbabel.py to generate InChIKey with reconnect metal option

2011-12-09 Thread Ken Smith
Folks I'm trying to use Openbabel to generate a non-standard InChIKey for a few of my metal cyanides and isocyanides (because configurations produce the same Standard InChIKey). Below is my code. Execution of the code leaving the comments intact yields the Standard InChI and Standard

[Open Babel] List of monatomic ions for all elements...

2011-02-17 Thread Ken Smith
Hi Noel I've been parsing the element.txt and isotope.txt files that is provided in the distribution of OpenBabel. This has allowed me to produce a list of InChIs and InChIKeys for all the isotopes of all the elements (at least up to element 104 - after that the InChI generation code

Re: [Open Babel] Openbabel python bindings on Mac OS X

2011-01-25 Thread Ken Smith
is required - Noel On 24 January 2011 23:29, Ken Smith k.w.sm...@qub.ac.uk wrote: Folks I've successfully installed OpenBabel and its python bindings several times from the development source code on a unix box However, I'm having difficulty the Python Bindings on a Mac. There's no sign of any

Re: [Open Babel] Openbabel python bindings on Mac OS X

2011-01-25 Thread Ken Smith
2011, at 14:03, Noel O'Boyle wrote: On 25 January 2011 13:31, Ken Smith k.w.sm...@qub.ac.uk wrote: Hi Noel I didn't have this problem on 7 December on my Linux system. However, I did the necessary installations (SWIG 2 and PCRE to install SWIG) and it installed OK with the following caveats