Re: [Open Babel] Conformer generation with openbabel trunk - problem...

2012-07-02 Thread Geoff Hutchison
> But when I try to generate conformers using: > > obabel ./astex_1g9v/ligand_babel3d.sdf -O/tmp/test.sdf --conformer --nconf 10 > --writeconformers --score rmsd > > I get: > > Initial conformer does not pass filter! > Initial conformer count: 0 > Generation #1 0 > Generation #2 -nan Yes, th

[Open Babel] Conformer generation with openbabel trunk - problem...

2012-06-30 Thread JP
Hi there, I have checked out and successfully built openbabel from the svn repository (trunk). $ obabel -V Open Babel 2.3.90 -- Jun 30 2012 -- 12:38:05 But when I try to generate conformers using: obabel ./astex_1g9v/ligand_babel3d.sdf -O/tmp/test.sdf --conformer --nconf 10 --writeconformers --