Re: [Open Babel] Still having problems with OBConformerSearch

2012-08-15 Thread Geoff Hutchison
> page. However, I aways get the error message "Initial conformer does > not pass filter! Initial conformer count: 0". I used methotrexate, as I've found a few cases like this and am working on a fix. The biggest problem is making sure there isn't an infinite loop. If you are willing to send me

[Open Babel] Still having problems with OBConformerSearch

2012-08-05 Thread Alessandro Nascimento
Hi OB folks, I am still having some problems with the GA algorithm for conformer generation. My purpose is to generate a set of conformers 'on-the-fly' on a C++ program for binding energy evaluation. So, I opened the mol2 file, minimized it with steepest descent and used OBConformerSearch as desc