.org/documentation/file-format-content/format33/sect9.html
I don't know why the atom name is not preserved.
Ling
From: "Bennion, Brian"
To: "openbabel-discuss@lists.sourceforge.net"
Sent: Thursday, November 19, 2015 4:17 PM
Subject: [Open Babel] atom names stripped i
Hello
I recently noted with the help of a colleague that atom names were not being
output properly after an OBminimization operation on a pdb file, especially one
that contains a Bromine atom.
The command I use is obminimize -ff UFF -sd -n 5000 -opdb ligand.pdb >
ligandMin.pdb
The input ligand
