the Jupyter notebooks exist ;)
On Sat, 2 Mar 2019, 3:31 AM Linas Vepstas, wrote:
> Abu,
>
> And just to be clear -- when Ben says "a brave soul", what he means is
> that it is very much a roll-up-your-sleeves-and-do-it-yourself project.
> There are no easy-to-use push-button GUI's for this: you
Ha. Basically the conclusion I just arrived at before reading this. Ok,
next step scrap current install and start over.
On Friday, March 1, 2019 at 7:07:13 PM UTC-6, linas wrote:
>
>
>
> On Fri, Mar 1, 2019 at 2:17 AM JRTA >
> wrote:
>
>> First script is rolling along how long should it go for.
My coding experience is limited to the basics of Python, building a few web
pages with Dreamweaver and some minor work programming micro processors. I
have no formal computer science education, but seem to pick things up
intuitively once I spend a bit of time on anything. I am foremost a
musici
On Fri, Mar 1, 2019 at 2:17 AM JRTA wrote:
> First script is rolling along how long should it go for.. getting a bunch
> of +EXPORT_GPL_SYMBOL_GPL: command not found.
>
This error has nothing to do with opencog. This error means that your
development environment is borked somehow.
Please make s
Abu,
And just to be clear -- when Ben says "a brave soul", what he means is
that it is very much a roll-up-your-sleeves-and-do-it-yourself project.
There are no easy-to-use push-button GUI's for this: you would have to read
about and understand a lot of non-bioinformatics systems, and then figure
The MOSES-for-supervised-learning stuff is a bit specialized, and
doesn't use the main OpenCog codebase, MOSES is a standalone system
However Nil wrote code for importing learned MOSES models into the
Atomspace, and once you've done that you can play with PLN inference
or other tools for combining
Hi Ben,
Thank your for responding my queries. I will try to find the papers and
guessing you are one of the authors of the papers. It would be very useful
for me if I could get Bioinfromatics related toy examples to play around,
which will help me to get to know the opencog code. Hope Mike will po
Hi Ivan,
Thank your for providing the details and the interesting papers. It will
read the papers and try to understand why TSP is choice of the algorithm.
Thanking you again,
Abu
On Fri, 1 Mar 2019 at 23:09, Ivan V. wrote:
> Hi, Abu
>
> The task about travelling salesman problem used in prot
There are two pieces to what we've been doing w/ OpenCog for bioinformatics
1) supervised classification of genomics datasets (e.g. SNPs, gene
expression) using MOSES
2) integration of various ontologies into the Atomspace, import of
MOSES classification models into the Atomspace, and use of PLN
Hi, Abu
The task about travelling salesman problem used in protein folding is not
such a trivial task.
These two papers I have in mind that relate to computing protein folding,
regardless to OpenCog:
- A Travelling Salesman Approach to Protein Conformation -
44daca495f4b0a9d9affbe68c6926cc
Hi Linas,
Thank for the update. I will be waiting for Mike's response.
With regards,
Abu
On Fri, 1 Mar 2019 at 21:51, Linas Vepstas wrote:
> Hi,
>
> Opencog has many parts to it.There is an agi-bio part for bioinformatics
> but it seems slim, and I think the main part of that system is somewh
Hi,
Opencog has many parts to it.There is an agi-bio part for bioinformatics
but it seems slim, and I think the main part of that system is somewhere
else. I'm hoping Mike Duncan can respond in more detail.
--linas
On Fri, Mar 1, 2019 at 1:15 PM Abu Naser wrote:
> Hello Everyone,
>
> I have ju
Hi Ivan,
Yes, protein folding is one of my interests. I am very new to opencog and
any help will be very useful. Please let me know how to go about TSP with
opencog.
With regards,
Abu
On Fri, 1 Mar 2019 at 21:20, Ivan V. wrote:
> Mr. Abu Naser,
>
> Thank You very much for the response, I'll c
Mr. Abu Naser,
Thank You very much for the response, I'll check those keywords
(aggregation and misfolding) more thoroughly between web research papers
when I get more time.
As for OpenCog, I'm generally interested in used technology (though I'm far
away from being an expert), but I'm not aware o
Hello Ivan,
Thank you for your email. It is more of a problem of protein folding. It
is OK to synthesise short peptides because of their simpler structural
conformation. But, when the protein gets bigger, it may become aggregated
with other fellow protein molecules. As a result, site of adding n
YouTube videos of
U.S. Congress money laundering hearing
of
Saudi Billionaire " Maan Al sanea"
with *bank of America*
and The owner of Saad Hospital and Schools
in the Eastern Province in *Saudi Arabia*
and the Chairman of the Board of Directors of Awal Bank in *Bahrain*
Wit
Hi Mr. Naser,
I'm just a lurker here, but I was wondering, has there been any
improvements in protein synthesis recently? I read there was problems in
forming big chains of amino-acids. Also, how are proteins related to
medicaments production, if I may ask?
Thank You for your patience, and forgiv
Hello Everyone,
I have just installed opencog on Ubuntu. I am a biologist and wish to use
opencog for solving biological problems. I have been wondering whether
there is any tutorial related to Bioinformatics. Please let me know.
With best regards,
Abu
--
You received this message because
So! if I can get this set up I will hire one or more interns. IF I can't
get it set up I'll hire one intern, lol. Seriously though. How has anything
ever gotten done without interns.
On Thursday, February 28, 2019 at 1:04:54 PM UTC-6, JRTA wrote:
>
> I'm pulling my hair out trying to configu
yeah bunch of commands not found. Don't know if i'll beat the one week
install mark but will give it my best.
On Thursday, February 28, 2019 at 1:04:54 PM UTC-6, JRTA wrote:
>
> I'm pulling my hair out trying to configure and install all that is needed
> to build open cog. Can I get a copy of s
First script is rolling along how long should it go for.. getting a bunch
of +EXPORT_GPL_SYMBOL_GPL: command not found. I did get quite a way with
the manual install but ran into some Ubuntu stuff that was missing that I
was trying to track down. I'll get this bad boy going though. XD
On Thurs
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