[Bug 1134835] Review Request: kissplice - Detection of various kinds of polymorphism in RNA-seq data

2021-05-26 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1134835 Susi Lehtola changed: What|Removed |Added Blocks|505154 (FE-SCITECH) | Referenced Bugs:

[Bug 1134835] Review Request: kissplice - Detection of various kinds of polymorphism in RNA-seq data

2019-10-23 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1134835 David Parsons changed: What|Removed |Added Status|NEW |CLOSED Resolution|---

[Bug 1134835] Review Request: kissplice - Detection of various kinds of polymorphism in RNA-seq data

2019-10-23 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1134835 David Parsons changed: What|Removed |Added Flags|needinfo?(david.parsons@inr | |ia.fr)

[Bug 1134835] Review Request: kissplice - Detection of various kinds of polymorphism in RNA-seq data

2019-04-18 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1134835 Orion Poplawski changed: What|Removed |Added CC||or...@nwra.com Flags|

[Bug 1134835] Review Request: kissplice - Detection of various kinds of polymorphism in RNA-seq data

2014-09-03 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1134835 --- Comment #20 from David Parsons david.pars...@inria.fr --- Hi, I've submitted a patch to upstream that fixes the build issue. I was even lucky enough to come across the team leader yesterday, they will talk about it at their next meeting

[Bug 1134835] Review Request: kissplice - Detection of various kinds of polymorphism in RNA-seq data

2014-08-30 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1134835 --- Comment #19 from Christopher Meng i...@cicku.me --- (In reply to David Parsons from comment #18) (In reply to Pierre-YvesChibon from comment #16) (In reply to David Parsons from comment #10) As for point 3. I had read this:

[Bug 1134835] Review Request: kissplice - Detection of various kinds of polymorphism in RNA-seq data

2014-08-29 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1134835 Pierre-YvesChibon pin...@pingoured.fr changed: What|Removed |Added CC|

[Bug 1134835] Review Request: kissplice - Detection of various kinds of polymorphism in RNA-seq data

2014-08-29 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1134835 --- Comment #2 from David Parsons david.pars...@inria.fr --- Thank you Pierre-Yves I have applied your suggestions except for the last once since I indeed intend to package for EPEL as well. Here's the new SPEC and SRPM files :

[Bug 1134835] Review Request: kissplice - Detection of various kinds of polymorphism in RNA-seq data

2014-08-29 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1134835 --- Comment #3 from Pierre-YvesChibon pin...@pingoured.fr --- Incrementing the release number was good, replacing the entry for 2.2.1-1 in the changelog not :) The changelog contains a description of the changes that occurred to the spec file

[Bug 1134835] Review Request: kissplice - Detection of various kinds of polymorphism in RNA-seq data

2014-08-29 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1134835 --- Comment #4 from David Parsons david.pars...@inria.fr --- Yes, I should have seen that. Well, here come v3 then... http://parsons.eu/tmp/kissplice.spec http://parsons.eu/tmp/kissplice-2.2.1-3.fc20.src.rpm -- You are receiving this mail

[Bug 1134835] Review Request: kissplice - Detection of various kinds of polymorphism in RNA-seq data

2014-08-29 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1134835 Christopher Meng i...@cicku.me changed: What|Removed |Added Blocks||505154 (FE-SCITECH)

[Bug 1134835] Review Request: kissplice - Detection of various kinds of polymorphism in RNA-seq data

2014-08-29 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1134835 --- Comment #6 from Pierre-YvesChibon pin...@pingoured.fr --- (In reply to Christopher Meng from comment #5) 2. Drop rm -rf %{buildroot} Maybe you could pay attention to the discussion occurring on a ticket before commenting? -- You are

[Bug 1134835] Review Request: kissplice - Detection of various kinds of polymorphism in RNA-seq data

2014-08-29 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1134835 --- Comment #7 from Christopher Meng i...@cicku.me --- (In reply to Pierre-YvesChibon from comment #6) (In reply to Christopher Meng from comment #5) 2. Drop rm -rf %{buildroot} Maybe you could pay attention to the discussion occurring

[Bug 1134835] Review Request: kissplice - Detection of various kinds of polymorphism in RNA-seq data

2014-08-29 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1134835 --- Comment #8 from Pierre-YvesChibon pin...@pingoured.fr --- (In reply to Christopher Meng from comment #7) (In reply to Pierre-YvesChibon from comment #6) (In reply to Christopher Meng from comment #5) 2. Drop rm -rf %{buildroot}

[Bug 1134835] Review Request: kissplice - Detection of various kinds of polymorphism in RNA-seq data

2014-08-29 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1134835 --- Comment #9 from Pierre-YvesChibon pin...@pingoured.fr --- @David you probably want to check that link as well, and if you are planning on packaging this application for epel5, you probably want to look at the next section ;-) -- You are

[Bug 1134835] Review Request: kissplice - Detection of various kinds of polymorphism in RNA-seq data

2014-08-29 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1134835 --- Comment #10 from David Parsons david.pars...@inria.fr --- Hi Christopher and thank you for adding your comments. I had seen that point 1. (BR gcc-c++) wasn't needed but I thought it was harmless so I had left it in. I will remove it. For

[Bug 1134835] Review Request: kissplice - Detection of various kinds of polymorphism in RNA-seq data

2014-08-29 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1134835 Ralf Corsepius rc040...@freenet.de changed: What|Removed |Added CC||rc040...@freenet.de

[Bug 1134835] Review Request: kissplice - Detection of various kinds of polymorphism in RNA-seq data

2014-08-29 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1134835 --- Comment #12 from Christopher Meng i...@cicku.me --- Hi David, Ralf's comments are right, IMO less legacy RPM stuffs in SPEC will make it cleaner. Also one more important, if you don't use EPEL, don't maintain packages on that branch. I

[Bug 1134835] Review Request: kissplice - Detection of various kinds of polymorphism in RNA-seq data

2014-08-29 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1134835 --- Comment #13 from David Parsons david.pars...@inria.fr --- OK I will remove rm -rf %{buildroot} from %install and add it back into the EPEL5 package when needed. As for the %{_prefix}/lib vs %{_libdir} (or %{_libexecdir}), I'm a former

[Bug 1134835] Review Request: kissplice - Detection of various kinds of polymorphism in RNA-seq data

2014-08-29 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1134835 --- Comment #14 from Pierre-YvesChibon pin...@pingoured.fr --- (In reply to Ralf Corsepius from comment #11) (In reply to David Parsons from comment #10) However, if EPEL5 is still being used, I suppose it would be best to support it and

[Bug 1134835] Review Request: kissplice - Detection of various kinds of polymorphism in RNA-seq data

2014-08-29 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1134835 --- Comment #15 from Pierre-YvesChibon pin...@pingoured.fr --- Finally, you need a sponsor first, *sigh... Hope you can get sponsored soon. Unless I'm mistaking, I already see two sponsors on that review :) -- You are receiving this mail

[Bug 1134835] Review Request: kissplice - Detection of various kinds of polymorphism in RNA-seq data

2014-08-29 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1134835 --- Comment #16 from Pierre-YvesChibon pin...@pingoured.fr --- (In reply to David Parsons from comment #10) As for point 3. I had read this: http://fedoraproject.org/wiki/Packaging:Guidelines#Libexecdir (files in lib are indeed executable

[Bug 1134835] Review Request: kissplice - Detection of various kinds of polymorphism in RNA-seq data

2014-08-29 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1134835 --- Comment #17 from Ralf Corsepius rc040...@freenet.de --- (In reply to Pierre-YvesChibon from comment #14) I only partly agree with this, I prefer to review the most complete spec file even if things are later cleaned in git. I've seen

[Bug 1134835] Review Request: kissplice - Detection of various kinds of polymorphism in RNA-seq data

2014-08-29 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1134835 --- Comment #18 from David Parsons david.pars...@inria.fr --- (In reply to Pierre-YvesChibon from comment #16) (In reply to David Parsons from comment #10) As for point 3. I had read this:

[Bug 1134835] Review Request: kissplice - Detection of various kinds of polymorphism in RNA-seq data

2014-08-28 Thread bugzilla
https://bugzilla.redhat.com/show_bug.cgi?id=1134835 David Parsons david.pars...@inria.fr changed: What|Removed |Added Blocks||177841