needinfo canceled: [Bug 708402] Review Request: tophat - A spliced read mapper for RNA-Seq

Product: Fedora Version: rawhide Component: Package Review Package Review has canceled Package Review 's request for Adam Huffman 's needinfo: Bug 708402: Review Request: tophat - A spliced read mapper for RNA-Seq https://bugzilla.redhat.com/show_bug.cgi?id=708402 --- Comment #16 from

[Bug 708402] Review Request: tophat - A spliced read mapper for RNA-Seq

https://bugzilla.redhat.com/show_bug.cgi?id=708402 --- Comment #14 from Dave Love --- For what it's worth, http://www.ccb.jhu.edu/software/tophat/index.shtml now says tophat is "largely superseded". There's a quick go at hisat2, the replacement, in the above copr; it

[Bug 708402] Review Request: tophat - A spliced read mapper for RNA-Seq

https://bugzilla.redhat.com/show_bug.cgi?id=708402 --- Comment #13 from Dave Love d.l...@liverpool.ac.uk --- (In reply to Dave Love from comment #12) Unfortunately it can't currently go in EPEL6, due to the boost version required, but it's in the above copr using the boost scl if anyone

[Bug 708402] Review Request: tophat - A spliced read mapper for RNA-Seq

https://bugzilla.redhat.com/show_bug.cgi?id=708402 Dave Love d.l...@liverpool.ac.uk changed: What|Removed |Added Status|CLOSED |NEW

[Bug 708402] Review Request: tophat - A spliced read mapper for RNA-Seq

https://bugzilla.redhat.com/show_bug.cgi?id=708402 Bug 708402 depends on bug 1105730, which changed state. Bug 1105730 Summary: Review Request: seqan - Open source C++ library of efficient algorithms and data structures https://bugzilla.redhat.com/show_bug.cgi?id=1105730 What

[Bug 708402] Review Request: tophat - A spliced read mapper for RNA-Seq

https://bugzilla.redhat.com/show_bug.cgi?id=708402 Christopher Meng i...@cicku.me changed: What|Removed |Added Depends On||1105730 Referenced

[Bug 708402] Review Request: tophat - A spliced read mapper for RNA-Seq

Please do not reply directly to this email. All additional comments should be made in the comments box of this bug. https://bugzilla.redhat.com/show_bug.cgi?id=708402 --- Comment #9 from Adam Huffman bl...@verdurin.com 2012-01-30 17:13:10 EST --- Still working on SeqAn. In the meantime,

[Bug 708402] Review Request: tophat - A spliced read mapper for RNA-Seq

Please do not reply directly to this email. All additional comments should be made in the comments box of this bug. https://bugzilla.redhat.com/show_bug.cgi?id=708402 --- Comment #8 from Adam Huffman bl...@verdurin.com 2012-01-08 06:55:50 EST --- Yes, I'm looking at SeqAn again now. --

[Bug 708402] Review Request: tophat - A spliced read mapper for RNA-Seq

Please do not reply directly to this email. All additional comments should be made in the comments box of this bug. https://bugzilla.redhat.com/show_bug.cgi?id=708402 --- Comment #7 from Volker Fröhlich volke...@gmx.at 2012-01-07 23:19:52 EST --- SeqAn must still be un-bundled from tophat to

[Bug 708402] Review Request: tophat - A spliced read mapper for RNA-Seq

Please do not reply directly to this email. All additional comments should be made in the comments box of this bug. https://bugzilla.redhat.com/show_bug.cgi?id=708402 --- Comment #6 from Adam Huffman bl...@verdurin.com 2012-01-03 08:20:06 EST --- Update to 1.3.3:

[Bug 708402] Review Request: tophat - A spliced read mapper for RNA-Seq

Please do not reply directly to this email. All additional comments should be made in the comments box of this bug. https://bugzilla.redhat.com/show_bug.cgi?id=708402 Alex Lancaster al...@users.sourceforge.net changed: What|Removed |Added

[Bug 708402] Review Request: tophat - A spliced read mapper for RNA-Seq

Please do not reply directly to this email. All additional comments should be made in the comments box of this bug. https://bugzilla.redhat.com/show_bug.cgi?id=708402 --- Comment #4 from Adam Huffman bl...@verdurin.com 2011-06-28 03:00:00 EDT --- New bugfix release:

[Bug 708402] Review Request: tophat - A spliced read mapper for RNA-Seq

Please do not reply directly to this email. All additional comments should be made in the comments box of this bug. https://bugzilla.redhat.com/show_bug.cgi?id=708402 --- Comment #5 from Adam Huffman bl...@verdurin.com 2011-06-28 17:40:35 EDT --- SeqAn request is at

[Bug 708402] Review Request: tophat - A spliced read mapper for RNA-Seq

Please do not reply directly to this email. All additional comments should be made in the comments box of this bug. https://bugzilla.redhat.com/show_bug.cgi?id=708402 Adam Huffman bl...@verdurin.com changed: What|Removed |Added

[Bug 708402] Review Request: tophat - A spliced read mapper for RNA-Seq

Please do not reply directly to this email. All additional comments should be made in the comments box of this bug. https://bugzilla.redhat.com/show_bug.cgi?id=708402 Adam Huffman bl...@verdurin.com changed: What|Removed |Added

[Bug 708402] Review Request: tophat - A spliced read mapper for RNA-Seq

Please do not reply directly to this email. All additional comments should be made in the comments box of this bug. https://bugzilla.redhat.com/show_bug.cgi?id=708402 Volker Fröhlich volke...@gmx.at changed: What|Removed |Added

[Bug 708402] Review Request: tophat - A spliced read mapper for RNA-Seq

Please do not reply directly to this email. All additional comments should be made in the comments box of this bug. https://bugzilla.redhat.com/show_bug.cgi?id=708402 --- Comment #2 from Adam Huffman bl...@verdurin.com 2011-05-28 19:45:55 EDT --- Ugh. I've made a start on SeqAn and that