[Paraview] Help with memory crash?

I am trying to run a script on a cluster with Paraview in parallel. The cluster architecture is 16cores and 64GB per node. The script reads in two XMF files, one contains a grid of 2002x100x1000 points along with one variable. There is a loop to perform two iterations: try: paraview.simple except:

Re: [Paraview] Help with memory crash?

2002 x 100 x 1000 points the memory after one iteration increased from 10.42GB before the script to 45.25GB after the script. How can I properly delete all datasets and clear the memory in Paraview? On Wed, Jan 7, 2015 at 2:55 PM, Nikolaos Beratlis wrote: > I am trying to run a script o

Re: [Paraview] Help with memory crash?

ject from the script? On Wed, Jan 7, 2015 at 9:17 PM, Nikolaos Beratlis wrote: > So I did some more tests by running the script interactively. I used a > smaller grid first, 2002 x 20 x 1000 points and ran it only for 1 > iteration. When Paraview loaded the memory usage on the server

[Paraview] Help with producing a X Y plot of a scalar

Hi, I have a cartesian grid and two scalars U, W that I read into paraview as follows: http://www.w3.org/2003/XInclude"; Version="2.2"> ../grid3dc_vxvyvz_VP.h5sp:/X ../grid3dc_vxvyvz_VP.h5sp:/Y ../g

[Paraview] Attribute recalculation at center

HI, I have a cartesian grid which I read into paraview along with its attribute as follows: http://www.w3.org/2003/XInclude"; Version="2.2"> ../grid3dc_vxvyvz_VP.h5sp:/X ../grid3dc_vxvyvz_VP.h5sp:/Y

[Paraview] XY plot of time series

Hi, I am trying to create a plot of a time series. I read one file (0001) as follows: http://www.w3.org/2003/XInclude"; Version="2.2"> ../VPfield_files/grid3dc_vxvyvz_VP.h5sp:/X ../VPfield_files/grid3dc_vxvyvz_VP.h5sp:/Y

[Paraview] How to change background color on scatter plot?

I have a scatter plot like this one ​ and I want to change the background color from white to green or some other color. How can I do that? Regards, Nikos ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware

[Paraview] Reading PLOT3D into Paraview

Hi, I have problems reading PLOT3D files into paraview. Here is a small test file containing the grid: 1 3 2 2 0.0 1.0 2.0 0.0 1.0 2.0 0.0 1.0 2.0 0.0 1.0 2.0 0.0 0.0 0.0 1.0 1.0 1.0 0.0 0.0 0.0 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 The grid is a 3D one, it has one block wi

[Paraview] XDMF and structured grid in cylindrical coordinates (curvilinear)

I am using a 3D structured orthogonal grid in cylindrical coordinates. I can read the grid as a cartesian grid using the following XDMF file by specifying TopologyType "3DRectMesh" and GeometryType="VXVYVZ" (see attached image): 0.0 1.0 2.0 3.0 4.0 5.0 0.0 1.5708 3.1415 4.7124 0.0 1.0

Re: [Paraview] XDMF and structured grid in cylindrical coordinates (curvilinear)

of both (produced in ParaView via Data Object Generator (RG1 | > SG1)->Write as XDMF) are attached. > > > > David E DeMarle > Kitware, Inc. > R&D Engineer > 21 Corporate Drive > Clifton Park, NY 12065-8662 > Phone: 518-881-4909 > > > On Tue, Mar 19, 2

Re: [Paraview] XDMF and structured grid in cylindrical coordinates (curvilinear)

n > after you load the RectMesh into ParaView. > > > David E DeMarle > Kitware, Inc. > R&D Engineer > 21 Corporate Drive > Clifton Park, NY 12065-8662 > Phone: 518-881-4909 > > > On Wed, Mar 20, 2013 at 10:52 AM, Nikolaos Beratlis < > nikos.berat...@gmail.com&

Re: [Paraview] XDMF and structured grid in cylindrical coordinates (curvilinear)

gt; Kitware, Inc. > R&D Engineer > 21 Corporate Drive > Clifton Park, NY 12065-8662 > Phone: 518-881-4909 > > > On Wed, Mar 20, 2013 at 10:52 AM, Nikolaos Beratlis < > nikos.berat...@gmail.com> wrote: > >> Hi David, >> >> I looked at your examples and I

[Paraview] Python scripting/Grid geometry transformation

Hi, I am reading the following xmf file (attached as var3d.xmf) into Paraview: 0. 1. 2. 0. 2.0944 4.1888 6.2832 1. 2. 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 The grid is a 3D orthogonal grid read in cartesian

Re: [Paraview] Attribute for grid collection

; > > > > > > > >1. 2. 3. > > > 0. 2.0944 4.1888 6.2832 > > >2. 3. > > > > Format="XML"> > > 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 2

[Paraview] Help with batch processing and loops

Hi, I am switching to using Paraview from Tecplot and I need to do the following thing: I have a series of XDMF files that I need to read into Paraview one by one, apply some filters and export an image. In Tecplot I would write a macro, inside the macro there was a loop that changed the name of t

[Paraview] XY plot in Paraview

I am reading a structured orthogonal grid and a variable with the following XDMF file: ../VPfield_files/grid3dc_VP.h5sp:/X ../VPfield_files/grid3dc_VP.h5sp:/Y ../VPfield_files/grid3dc_VP.h5sp:/Z

[Paraview] Memory leak with Python script (XDMF and HDF5)

I am using the following python script to extract images from a series of files for an animation: try: paraview.simple except: from paraview.simple import * paraview.simple._DisableFirstRenderCameraReset() index = [None]* m = 0 for i in range(0, 9): for j in range(0, 9): for k in range

[Paraview] Paraview in batch and in parallel

I read in Paraview Wiki that as of Paraview 3.10 the MPI library is packaged in the binary release. Do I still need to have an MPI version installed on my computer to run Paraview in parallel in batch mode (pvbatch)? If MPI is not required, then how do I run pvbatch in parallel. Is there an argumen

[Paraview] Help with reading vectors from XDMF

I have following XDMF file: http://www.w3.org/2003/XInclude"; Version="2.2"> 0.0 1.0 0.0 1.0 0.0 1.0 -1.0 1.0 -1.0 1.0 -

Re: [Paraview] Help with reading vectors from XDMF

When I read the following file: http://www.w3.org/2003/XInclude"; Version="2.2"> 0.0 1.0 0.0 1.0 0.0 1.0 -1.0 1.0 -1.0 1

[Paraview] Help with reading vectors from XDMF

I want to read a XDMF file with an orthogonal structured grid and a vector attribute. I have the following example file: http://www.w3.org/2003/XInclude"; Version="2.2"> 0.0 1.0 0.0 1.0 0.0

[Paraview] Help with adjusting contour levels in python script

Hi, I am running a small python code with pvbatch that read a XDMF file and plots contours: cf_VP_anim_xmf = XDMFReader( FileName=wdir+'VPfield_files/XDMF/cf_VP' +index[i]+'.xmf' ) cf_VP_anim_xmf.CellArrays = [] cf_VP_anim_xmf.Sets = [] cf_VP_anim_xmf.PointArrays = ['Cf']

[Paraview] Reading a vector with XDMF and structured grid

Hi, I am trying to read a vector on a cartesian structured grid from 3 separate scalar variables as follows: http://www.w3.org/2003/XInclude"; Version="2.2"> ../grid3dc_vxvyvz_phavg.h5sp:/X ../grid3dc_vxvyvz_phavg.h5sp:/Y

[Paraview] Error reading XDMF file

Hi, I have the following XDMF file: http://www.w3.org/2003/XInclude"; Version="2.0"> ../grid3dc_vxvyvz_VP.h5sp:/X ../grid3dc_vxvyvz_VP.h5sp:/Y ../grid3dc_vxvyvz_VP.h5sp:/Z

[Paraview] Error reading timeseries with spatial grid collection with XDMF

Hi, I have a cartesian structured grid made of two sub-domains and a two snap shots in a time that I would like to read in Paraview. The data and grid files are stored in HDF5 file and I use a XDMF file to read them in a Paraview. The XDMF files looks like this: ../grid_VPreg_vxvyvz.

Re: [Paraview] Error reading timeseries with spatial grid collection with XDMF

View are you using? >> Can you provide a full dataset we could use to reproduce the issue? >> >> Best, >> >> >> *Joachim Pouderoux*, PhD >> >> *Technical Expert - Scientific Computing Team* >> *Kitware SAS <http://www.kitware.fr>* >> >&g