OK, so Paraview screws up NIFTI coordinates, or doesn't read the header right?
The surface mesh that ITK-SNAP makes is in vtk format, so it must be that
ITK-SNAP doesn't put the orientation info into the right format?
Looking closely at my image, I can see that the vtk mesh in Paraview is ind
Hi,
I have had some success with the Reflect filter. Often the SNAP meshes are
reflected about the origin of the image. Thus I do Reflect on the mesh (I
always find it easier to transform the mesh rather than the image in Paraview),
with Plane set to X / Y / Z as appropriate, and Center set to
It shouldn't do that, certainly not randomly.
All the filter does is apply the transformation matrix you give it
(specified by the properties panel and/or by moving the box widget in
the 3D view) to the point coordinates and the vector and normal data
fields of the input data set to make a new dat
OK, that worked. I've figured out how it works, following what you suggested.
Unfortunately, Paraview didn't just shift the data over, leaving it in the same
orientation, it also inexplicably changed the orientation by several degrees
(??). Even if I am able to get the two boxes in basically th
