[Paraview] Molecular dynamics from lammps

2015-07-07 Thread Oksana
Dear community , I am trying to visualize array of atoms with their displacement vectors in Paraview. The structure is complicated and cannot be represented by StructuredGrid. The goal is to have slices with surface vectors (displacement) and atoms. I have tried two ways: 1.    Generate a

Re: [Paraview] Molecular dynamics from lammps

2015-07-09 Thread Berk Geveci
Dear Oksana, You do need to generate a volumetric mesh first and then slice it to generate a polygonal mesh. The volumetric mesh needs to interpolate your values in space somehow. This is what Delaunay would give you - it will generate a mesh where each atom is a node of a tetrahedra and the value

Re: [Paraview] Molecular dynamics from lammps

2015-07-10 Thread Berk Geveci
Let's try to refine this. How would you pick which atoms to project to the plane? Keep the atoms that are under a certain distance to the plane? Also, once you project the points on the plane, are you looking to interpolate the values on the plane continuously or simply show the vectors as glyphs?

Re: [Paraview] Molecular dynamics from lammps

2015-07-16 Thread Berk Geveci
Sorry Oksana. I have been swamped. I hope to get back to you soon. The solution will be to use the Python Calculator or Programmable Filter to do the projection of the points on the plane and threshold based on the distance. There are instructions on how to use these on the Users' Guide. I also wro

Re: [Paraview] Molecular dynamics from lammps

2015-07-21 Thread Oksana
Dear Berk, Thank you for the reply. I was trying to use the Python Calculator.  I created a plane source, but I do not know how to put it into projection calculation. The idea was to use one normal vector to find dislacement vectors projections in a plane. How to create a threshold I have no i

Re: [Paraview] Molecular dynamics from lammps

2015-07-23 Thread Oksana
Berk, thank you for the ideas! I have made the projections using Programmable Filter. It is really very powerful tool. Oksana ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html

Re: [Paraview] Molecular dynamics from lammps

2015-07-27 Thread Berk Geveci
You are welcome :-) Sorry I wasn't able to help a bit more. I was traveling. Maybe you could share your code with the list? I am sure others would benefit from this. Best, -berk On Thu, Jul 23, 2015 at 10:20 AM, Oksana wrote: > Berk, thank you for the ideas! I have made the projections using >