[petsc-dev] manual build errors

2011-06-28 Thread Gerard Gorman
ers Gerard -- next part -- An embedded and charset-unspecified text was scrubbed... Name: manual_diff URL: <http://lists.mcs.anl.gov/pipermail/petsc-dev/attachments/20110628/4b4343ab/attachment.ksh>

[petsc-dev] help for use PETSc

2011-06-28 Thread Barry Smith
On Jun 28, 2011, at 5:05 PM, Matthew Knepley wrote: > Jed has given excellent advice. However, your problems sound small. You > should try using a direct solver > like MUMPS (with --download-mumps during configure, and -ksp_type preonly > -pc_type lu -pc_factor_mat_solver_package mumps > during

[petsc-dev] Some warning messages.

2011-06-28 Thread Rebecca Xuefei Yuan
Hello Satish, I am sorry that I misunderstand that... I did remove -fast and past the rest to rerun it, however, it still halts... I do not have problem making this code with petsc/3.1. Thanks very much! Best, Rebecca Quoting Satish Balay : > I meant copy/paste/modify what you see on scr

[petsc-dev] help for use PETSc

2011-06-28 Thread Matthew Knepley
-- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -- next part -- An HTML attachment was scrubbed... URL: <http://lists.mcs.anl.gov/pipermail/petsc-dev/attachments/20110628/f85c4bbf/attachment.html>

[petsc-dev] manual build errors

2011-06-28 Thread Satish Balay
pushed to petsc-dev satish On Tue, 28 Jun 2011, Gerard Gorman wrote: > Hi > > I have just tried building the manual on the head of > petsc-dev/src/docs/tex/manual and found a few latex errors. Attached is > a patch which mostly just puts an escape before "_". However, in some > places it might

[petsc-dev] Some warning messages.

2011-06-28 Thread Rebecca Xuefei Yuan
Dear Satish, Thanks very much for your kind reply. I have my makefile : --- PETSC_ARCH = arch-cray-xt6-pkgs-opt include ${PETSC_DIR}/conf/variables include ${PETSC_DIR}/conf/rules include ${PETSC_DIR}/conf/test CLINKER = cc pcmhd1qsd3: pcmhd1qsd3.o c

[petsc-dev] Some warning messages.

2011-06-28 Thread Rebecca Xuefei Yuan
Hello all, I have installed petsc-dev on Hopper, and when I try to run examples, I found there are some warning messages during make, shall I ignore them? newcouple/trunk> make ex19 cc -o ex19.o -c -fast -mp -I/global/u2/x/xyuan/Software_HOPPER/petsc-dev/include -I/global/u2/x/xyuan/Softw

[petsc-dev] Some warning messages.

2011-06-28 Thread Satish Balay
The next thing to try is removing '-mp'. The next step is adding '-g'. But this is really a compiler issue - so perhaps the NERSC admins can help with figuring this out.. Satish On Tue, 28 Jun 2011, Rebecca Xuefei Yuan wrote: > Hello Satish, > > I am sorry that I misunderstand that... > > I d

[petsc-dev] PCREDISTRIBUTE

2011-06-28 Thread Satish Balay
pushed.. satish On Tue, 28 Jun 2011, John Mousel wrote: > Could someone throw a > > #define PCREDISTRIBUTE 'redistribute' > > in /include/finclude/petscpcdef.h? > > Thanks, > > John >

[petsc-dev] PCREDISTRIBUTE

2011-06-28 Thread John Mousel
Could someone throw a #define PCREDISTRIBUTE 'redistribute' in /include/finclude/petscpcdef.h? Thanks, John -- next part -- An HTML attachment was scrubbed... URL: <http://lists.mcs.anl.gov/pipermail/petsc-dev/attachments/20110628/ec2e3fd9/attachment.html>

[petsc-dev] Some warning messages.

2011-06-28 Thread Satish Balay
I meant copy/paste/modify what you see on screen: i.e You see: cc -o pcmhd1qsd3.o -c -fast -mp -I/global/u2/x/xyuan/Software_HOPPER/petsc-dev/include -I/global/u2/x/xyuan/Software_HOPPER/petsc-dev/arch-cray-xt6-pkgs-opt/include -I/opt/cray/udreg/2.2-1.0301.2966.16.2.gem/include -I/opt/cray/ugni/2

[petsc-dev] Some warning messages.

2011-06-28 Thread Satish Balay
On Tue, 28 Jun 2011, Rebecca Xuefei Yuan wrote: > Hello all, > > I have installed petsc-dev on Hopper, and when I try to run examples, I found > there are some warning messages during make, shall I ignore them? > > newcouple/trunk> make ex19 > cc -o ex19.o -c -fast -mp > -I/global/u2/x/xyuan/Sof

[petsc-dev] help for use PETSc

2011-06-28 Thread Jed Brown
called. -- next part -- An HTML attachment was scrubbed... URL: <http://lists.mcs.anl.gov/pipermail/petsc-dev/attachments/20110628/2030dee4/attachment.html>

[petsc-dev] help for use PETSc

2011-06-28 Thread tuane
Dear collegues, I and my professor need some help to better use PETSc. We are working in a petroleum reservoir numerical simulation modeling for science. We have experience on parallel computing with MPI and Petsc seems a good tool for us. We need solve a symmetric linear algebraic equation s

[petsc-dev] undefined reference to `petscstack'

2011-06-28 Thread Blaise Bourdin
more interesting than any results to which their experiments > lead. > -- Norbert Wiener -- Department of Mathematics and Center for Computation & Technology Louisiana State University, Baton Rouge, LA 70803, USA Tel. +1 (225) 578 1612, Fax +1 (225) 578 4276 http://www.math.lsu.edu/~bourdin -- next part -- An HTML attachment was scrubbed... URL: <http://lists.mcs.anl.gov/pipermail/petsc-dev/attachments/20110628/12ccefa1/attachment.html>

[petsc-dev] undefined reference to `petscstack'

2011-06-28 Thread Blaise Bourdin
Hi, On a freshly pulled / reconfigured / rebuild version of petsc-dev, I get the following link error whenever I try to compile any example: /share/apps/mvapich2-1.6-ib-intel11.1/bin/mpicxx -lstdc++ -wd1572 -O3 -axSSE4.2 -Kc++ -o ex10 ex10.o -Wl,-rpath,/share/apps/petsc-dev/Linux-intel11.1-

[petsc-dev] undefined reference to `petscstack'

2011-06-28 Thread Matthew Knepley
results to which their experiments lead. -- Norbert Wiener -- next part -- An HTML attachment was scrubbed... URL: <http://lists.mcs.anl.gov/pipermail/petsc-dev/attachments/20110628/5256ad45/attachment.html>