hat lasts more than an
hour.
Matt
--
What most experimenters take for granted before they begin their
experiments is infinitely more interesting than any results to which their
experiments lead.
-- Norbert Wiener
-- next part --
An HTML attachment was scrubbed...
URL:
<http://lists.mcs.anl.gov/pipermail/petsc-dev/attachments/20120831/933dc9b1/attachment.html>
next part --
An HTML attachment was scrubbed...
URL:
<http://lists.mcs.anl.gov/pipermail/petsc-dev/attachments/20120831/0ef83751/attachment.html>
On Aug 31, 2012, at 10:02 PM, Matthew Knepley wrote:
> On Fri, Aug 31, 2012 at 10:00 PM, Barry Smith wrote:
>
> I put a couple patches in petsc-3.3 can a skilled person (Satish?)
> please push them up to petsc-dev ?
>
> We are in deep shit if this takes skill. What is wrong with
>
>
pushed now
satish
On Fri, 31 Aug 2012, Barry Smith wrote:
>
> I put a couple patches in petsc-3.3 can a skilled person (Satish?)
> please push them up to petsc-dev ?
>
> Thanks
>
> Barry
>
attachment was scrubbed...
URL:
<http://lists.mcs.anl.gov/pipermail/petsc-dev/attachments/20120831/3b4b36c9/attachment.html>
I put a couple patches in petsc-3.3 can a skilled person (Satish?) please
push them up to petsc-dev ?
Thanks
Barry
his patented innovation, then sue them for billions.
American Innovation at work.
-- next part --
An HTML attachment was scrubbed...
URL:
<http://lists.mcs.anl.gov/pipermail/petsc-dev/attachments/20120831/173a32c0/attachment-0001.html>
t;> > [I'm having to add the flag BUILD_PARMETIS=0.] But now I get:
>>>>>> >
>>>>>> > cd
>>>>>> /home/balay/spetsc/externalpackages/clique/arch-clique/src/parmetis &&
>>>>>> /usr/lib64/ccache/gcc -Wall -Wwrite-strings -Wno-strict-aliasing
>>>>>> -Wno-unknown-pragmas -g3 -fno-inline -O0
>>>>>> -I/home/balay/spetsc/externalpackages/clique/arch-clique/external/elemental/include
>>>>>> -I/home/balay/soft/linux64/mpich2-1.1/include
>>>>>> -I/home/balay/spetsc/arch-clique/include
>>>>>> -I/home/balay/spetsc/externalpackages/clique/external/parmetis/include
>>>>>> -I/home/balay/spetsc/externalpackages/clique/external/parmetis/libparmetis
>>>>>> -I/home/balay/spetsc/externalpackages/clique/external/parmetis/metis/GKlib
>>>>>> -I/home/balay/spetsc/externalpackages/clique/external/parmetis/metis/include
>>>>>>-o CMakeFiles/parmetis-addons.dir/ParallelBisect.c.o -c
>>>>>> /home/balay/spetsc/externalpackages/clique/src/parmetis/ParallelBisect.c
>>>>>> >
>>>>>> /home/balay/spetsc/externalpackages/clique/src/parmetis/ParallelBisect.c:5:25:
>>>>>> fatal error: parmetislib.h: No such file or directory
>>>>>> >
>>>>>> > Looks like this code needs parmetis private includes. So the current
>>>>>> > stratergy [of splitting into -lparmetis-addons] isn't working.
>>>>>> >
>>>>>> > Perhaps we'll have to use a single patched metis/parmetis tarball
>>>>>> for
>>>>>> > both petsc and clique afterall..
>>>>>> >
>>>>>> > Satish
>>>>>> >
>>>>>>
>>>>>>
>>>>
>>>
>>
>
--
What most experimenters take for granted before they begin their
experiments is infinitely more interesting than any results to which their
experiments lead.
-- Norbert Wiener
-- next part --
An HTML attachment was scrubbed...
URL:
<http://lists.mcs.anl.gov/pipermail/petsc-dev/attachments/20120831/1f11c8f8/attachment.html>
t;>>>> > cd
>>>>> /home/balay/spetsc/externalpackages/clique/arch-clique/src/parmetis &&
>>>>> /usr/lib64/ccache/gcc -Wall -Wwrite-strings -Wno-strict-aliasing
>>>>> -Wno-unknown-pragmas -g3 -fno-inline -O0
>>>>> -I/home/balay/spetsc/externalpackages/clique/arch-clique/external/elemental/include
>>>>> -I/home/balay/soft/linux64/mpich2-1.1/include
>>>>> -I/home/balay/spetsc/arch-clique/include
>>>>> -I/home/balay/spetsc/externalpackages/clique/external/parmetis/include
>>>>> -I/home/balay/spetsc/externalpackages/clique/external/parmetis/libparmetis
>>>>> -I/home/balay/spetsc/externalpackages/clique/external/parmetis/metis/GKlib
>>>>> -I/home/balay/spetsc/externalpackages/clique/external/parmetis/metis/include
>>>>>-o CMakeFiles/parmetis-addons.dir/ParallelBisect.c.o -c
>>>>> /home/balay/spetsc/externalpackages/clique/src/parmetis/ParallelBisect.c
>>>>> >
>>>>> /home/balay/spetsc/externalpackages/clique/src/parmetis/ParallelBisect.c:5:25:
>>>>> fatal error: parmetislib.h: No such file or directory
>>>>> >
>>>>> > Looks like this code needs parmetis private includes. So the current
>>>>> > stratergy [of splitting into -lparmetis-addons] isn't working.
>>>>> >
>>>>> > Perhaps we'll have to use a single patched metis/parmetis tarball for
>>>>> > both petsc and clique afterall..
>>>>> >
>>>>> > Satish
>>>>> >
>>>>>
>>>>>
>>>
>>
>
-- next part --
An HTML attachment was scrubbed...
URL:
<http://lists.mcs.anl.gov/pipermail/petsc-dev/attachments/20120831/4b72b777/attachment.html>
> /usr/lib64/ccache/gcc -Wall -Wwrite-strings -Wno-strict-aliasing
>>>> -Wno-unknown-pragmas -g3 -fno-inline -O0
>>>> -I/home/balay/spetsc/externalpackages/clique/arch-clique/external/elemental/include
>>>> -I/home/balay/soft/linux64/mpich2-1.1/include
>>
es/clique/external/parmetis/libparmetis
>>> -I/home/balay/spetsc/externalpackages/clique/external/parmetis/metis/GKlib
>>> -I/home/balay/spetsc/externalpackages/clique/external/parmetis/metis/include
>>>-o CMakeFiles/parmetis-addons.dir/ParallelBisect.c.o -c
>>> /home/balay/spetsc/externalpackages/clique/src/parmetis/ParallelBisect.c
>>> >
>>> /home/balay/spetsc/externalpackages/clique/src/parmetis/ParallelBisect.c:5:25:
>>> fatal error: parmetislib.h: No such file or directory
>>> >
>>> > Looks like this code needs parmetis private includes. So the current
>>> > stratergy [of splitting into -lparmetis-addons] isn't working.
>>> >
>>> > Perhaps we'll have to use a single patched metis/parmetis tarball for
>>> > both petsc and clique afterall..
>>> >
>>> > Satish
>>> >
>>>
>>>
>
-- next part --
An HTML attachment was scrubbed...
URL:
<http://lists.mcs.anl.gov/pipermail/petsc-dev/attachments/20120831/9f83f41b/attachment.html>
ing than any results to which their
> experiments
> > lead.
> > -- Norbert Wiener
>
>
>
> --
> Chris Eldred
> DOE Computational Science Graduate Fellow
> Graduate Student, Atmospheric Science, Colorado State University
> B.S. Applied Computational Physics, Carnegie Mellon University, 2009
> chris.eldred at gmail.com
>
--
What most experimenters take for granted before they begin their
experiments is infinitely more interesting than any results to which their
experiments lead.
-- Norbert Wiener
-- next part --
An HTML attachment was scrubbed...
URL:
<http://lists.mcs.anl.gov/pipermail/petsc-dev/attachments/20120831/e6d0c74a/attachment.html>
- next part --
An HTML attachment was scrubbed...
URL:
<http://lists.mcs.anl.gov/pipermail/petsc-dev/attachments/20120831/8728c154/attachment.html>
alpackages/clique/external/parmetis/metis/include
>>-o CMakeFiles/parmetis-addons.dir/ParallelBisect.c.o -c
>> /home/balay/spetsc/externalpackages/clique/src/parmetis/ParallelBisect.c
>> >
>> /home/balay/spetsc/externalpackages/clique/src/parmetis/ParallelBisect.c:5:25:
>> fatal error: parmetislib.h: No such file or directory
>> >
>> > Looks like this code needs parmetis private includes. So the current
>> > stratergy [of splitting into -lparmetis-addons] isn't working.
>> >
>> > Perhaps we'll have to use a single patched metis/parmetis tarball for
>> > both petsc and clique afterall..
>> >
>> > Satish
>> >
>>
>>
-- next part --
An HTML attachment was scrubbed...
URL:
<http://lists.mcs.anl.gov/pipermail/petsc-dev/attachments/20120831/50fe9f07/attachment.html>
-I/home/balay/spetsc/externalpackages/clique/external/parmetis/include
>>> -I/home/balay/spetsc/externalpackages/clique/external/parmetis/libparmetis
>>> -I/home/balay/spetsc/externalpackages/clique/external/parmetis/metis/GKlib
>>> -I/home/balay/spetsc/externalpackages/clique/external/parmetis/metis/include
>>>-o CMakeFiles/parmetis-addons.dir/ParallelBisect.c.o -c
>>> /home/balay/spetsc/externalpackages/clique/src/parmetis/ParallelBisect.c
>>> >
>>> /home/balay/spetsc/externalpackages/clique/src/parmetis/ParallelBisect.c:5:25:
>>> fatal error: parmetislib.h: No such file or directory
>>> >
>>> > Looks like this code needs parmetis private includes. So the current
>>> > stratergy [of splitting into -lparmetis-addons] isn't working.
>>> >
>>> > Perhaps we'll have to use a single patched metis/parmetis tarball for
>>> > both petsc and clique afterall..
>>> >
>>> > Satish
>>> >
>>>
>>>
>
-- next part --
An HTML attachment was scrubbed...
URL:
<http://lists.mcs.anl.gov/pipermail/petsc-dev/attachments/20120831/21acbee6/attachment.html>
Ok- so if I have a multicomponent field, I should define the number of
dofs at a point for that field to be the total number of dofs I want
for that field. Ex a 2 component field with 2 dofs per component
should have 4 dofs defined, not 2. Num components just serves to give
additional info about th
ir/ParallelBisect.c.o -c
>> /home/balay/spetsc/externalpackages/clique/src/parmetis/ParallelBisect.c
>> >
>> /home/balay/spetsc/externalpackages/clique/src/parmetis/ParallelBisect.c:5:25:
>> fatal error: parmetislib.h: No such file or directory
>> >
>> > Looks like this code needs parmetis private includes. So the current
>> > stratergy [of splitting into -lparmetis-addons] isn't working.
>> >
>> > Perhaps we'll have to use a single patched metis/parmetis tarball for
>> > both petsc and clique afterall..
>> >
>> > Satish
>> >
>>
>>
-- next part --
An HTML attachment was scrubbed...
URL:
<http://lists.mcs.anl.gov/pipermail/petsc-dev/attachments/20120831/529dfc9f/attachment-0001.html>
The fix I'm hoping for is: the bundled software defaults to using
internal pckage - but the build tools also support
--with-package-include,--with-package-lib options for externally build
version of the internal packages.
this is partly done for metis/parmetis within clique but there is
this other
arallelBisect.c
> >
> /home/balay/spetsc/externalpackages/clique/src/parmetis/ParallelBisect.c:5:25:
> fatal error: parmetislib.h: No such file or directory
> >
> > Looks like this code needs parmetis private includes. So the current
> > stratergy [of splitting into -lparmetis-addons] isn't working.
> >
> > Perhaps we'll have to use a single patched metis/parmetis tarball for
> > both petsc and clique afterall..
> >
> > Satish
> >
>
>
-- next part --
An HTML attachment was scrubbed...
URL:
<http://lists.mcs.anl.gov/pipermail/petsc-dev/attachments/20120831/d77c352b/attachment.html>
Should have cc:d to petsc-dev
context:
clique packages metis,parmetis,elemental sources in a single bundle.
So we were attempting to build them separately [from petsc configure].
Jack has extensions to metis and parmetis functionality - thats used
in clique. We tried to split this out into separ
HMPI usage in PETSc relies on sending function pointer addresses between MPI
processes; this use to be fine since you start up several copies of the same
executable on a machine each has the same virtual addresses for instructions.
Yes, this a bit hacky but it worked great.
With ASLR t
I was wondering how components were treated in PetscSection- my
understanding is that a field with multiple components and multiple
dofs would have those dofs duplicated for each component, but that
does not appear to be the case. For example, let's say I have a field
with 2 components and 2 dofs t
22 matches
Mail list logo
