Re: [petsc-dev] MPI I/O tests failing in master after merging my branch

2018-03-22 Thread Lisandro Dalcin
On 22 March 2018 at 15:31, Matthew Knepley wrote: > On Thu, Mar 22, 2018 at 8:28 AM, Jed Brown wrote: >> > > What I imagined was just mapping each Petsc typedef (do we list them all > anywhere), > to an MPI type, creating those that are missing (as we do for MPIU_INT). Is > there more > to it tha

Re: [petsc-dev] --prefix install totally broken in next on Mac

2018-03-22 Thread Satish Balay
On Thu, 22 Mar 2018, Smith, Barry F. wrote: > This was all fine in the past for prefix builds on the Mac all the > recent messing around broke it. > >Is there a branch that fixes the problem or has the problem just been > commented on for a few days? This issue is with changes in

Re: [petsc-dev] Manual builds fail on master

2018-03-22 Thread Satish Balay
On Thu, 22 Mar 2018, Satish Balay wrote: > On Thu, 22 Mar 2018, Smith, Barry F. wrote: > > > > > Satish, > > > >Where did you find this error message on the web? I couldn't find any > > building of the manual from the Dashboard. > > > > per src/docs/tex/manual/makefile > > # Run make

Re: [petsc-dev] Manual builds fail on master

2018-03-22 Thread Satish Balay
On Thu, 22 Mar 2018, Smith, Barry F. wrote: > > Satish, > >Where did you find this error message on the web? I couldn't find any > building of the manual from the Dashboard. > per src/docs/tex/manual/makefile # Run make manual.pdf LOC=$PETSC_DIR GONULL="" to display all the error mes

Re: [petsc-dev] Manual builds fail on master

2018-03-22 Thread Satish Balay
I've pushed this fix to master. Satish On Thu, 22 Mar 2018, Satish Balay wrote: > > > petsc@thwomp:/sandbox/petsc/petsc.clone/src/docs/tex/manual$ /usr/bin/make > --no-print-directory manual.pdf LOC=/sandbox/petsc/petsc.clone GONULL= > > > aTeX Warning: Reference `ch_index' on page 7

Re: [petsc-dev] Manual builds fail on master

2018-03-22 Thread Smith, Barry F.
Satish, Where did you find this error message on the web? I couldn't find any building of the manual from the Dashboard. > On Mar 22, 2018, at 11:05 AM, Balay, Satish wrote: > >> > petsc@thwomp:/sandbox/petsc/petsc.clone/src/docs/tex/manual$ /usr/bin/make > --no-print-directo

Re: [petsc-dev] Manual builds fail on master

2018-03-22 Thread Patrick Sanan
Thanks! I should have caught this myself by rebuilding all my local docs instead of just the manual. 2018-03-22 17:05 GMT+01:00 Satish Balay : > > > petsc@thwomp:/sandbox/petsc/petsc.clone/src/docs/tex/manual$ > /usr/bin/make --no-print-directory manual.pdf > LOC=/sandbox/petsc/petsc.clo

Re: [petsc-dev] Manual builds fail on master

2018-03-22 Thread Satish Balay
> petsc@thwomp:/sandbox/petsc/petsc.clone/src/docs/tex/manual$ /usr/bin/make --no-print-directory manual.pdf LOC=/sandbox/petsc/petsc.clone GONULL= aTeX Warning: Reference `ch_index' on page 7 undefined on input line 42. ) [7] [8] (./acknowltmp.tex ! You can't use `macro parameter char

Re: [petsc-dev] Manual builds fail on master

2018-03-22 Thread Smith, Barry F.
I'll talk to Satish, it is now unclear (at least to me) where the manual is actually built and the output stored. > On Mar 22, 2018, at 5:17 AM, Patrick Sanan wrote: > > The manual and dev manual automated builds are failing on master, but I can't > reproduce on any of my local builds and

Re: [petsc-dev] DMFOREST repartitioning in PETSc

2018-03-22 Thread Matthew Knepley
On Thu, Mar 22, 2018 at 11:45 AM, Saurabh Chawdhary wrote: > Thank you Tobin. I was actually more interested in repartitioning after > the mesh has been dynamically changed (say, after refinement in certain > portions of mesh). > That kinds of repartitioning in p4est is handled by just splitting

Re: [petsc-dev] DMFOREST repartitioning in PETSc

2018-03-22 Thread Saurabh Chawdhary
Thank you Tobin. I was actually more interested in repartitioning after the mesh has been dynamically changed (say, after refinement in certain portions of mesh). On 03/22/2018 07:10 AM, Tobin Isaac wrote: On March 21, 2018 11:26:35 AM MDT, Saurabh Chawdhary wrote: Hello team, I haven't u

Re: [petsc-dev] MPI I/O tests failing in master after merging my branch

2018-03-22 Thread Matthew Knepley
On Thu, Mar 22, 2018 at 8:28 AM, Jed Brown wrote: > Matthew Knepley writes: > > > On Thu, Mar 22, 2018 at 7:09 AM, Jed Brown wrote: > > > >> Matthew Knepley writes: > >> > >> > On Thu, Mar 22, 2018 at 6:15 AM, Lisandro Dalcin > >> wrote: > >> > > >> >> On 22 March 2018 at 12:51, Matthew Knepl

Re: [petsc-dev] MPI I/O tests failing in master after merging my branch

2018-03-22 Thread Jed Brown
Matthew Knepley writes: > On Thu, Mar 22, 2018 at 7:09 AM, Jed Brown wrote: > >> Matthew Knepley writes: >> >> > On Thu, Mar 22, 2018 at 6:15 AM, Lisandro Dalcin >> wrote: >> > >> >> On 22 March 2018 at 12:51, Matthew Knepley wrote: >> >> > On Thu, Mar 22, 2018 at 3:44 AM, Lisandro Dalcin >>

Re: [petsc-dev] MPI I/O tests failing in master after merging my branch

2018-03-22 Thread Matthew Knepley
On Thu, Mar 22, 2018 at 7:09 AM, Jed Brown wrote: > Matthew Knepley writes: > > > On Thu, Mar 22, 2018 at 6:15 AM, Lisandro Dalcin > wrote: > > > >> On 22 March 2018 at 12:51, Matthew Knepley wrote: > >> > On Thu, Mar 22, 2018 at 3:44 AM, Lisandro Dalcin > >> wrote: > >> >> > >> >> > >> >> ft

Re: [petsc-dev] DMFOREST repartitioning in PETSc

2018-03-22 Thread Tobin Isaac
On March 21, 2018 11:26:35 AM MDT, Saurabh Chawdhary wrote: >Hello team, > >I haven't used petsc since DMFOREST was released but I have a question >regarding repartitioning of DMFOREST mesh. How is the repartitioning of > >mesh over processors done after some mesh refinement is carried out? Is

Re: [petsc-dev] MPI I/O tests failing in master after merging my branch

2018-03-22 Thread Jed Brown
Matthew Knepley writes: > On Thu, Mar 22, 2018 at 6:15 AM, Lisandro Dalcin wrote: > >> On 22 March 2018 at 12:51, Matthew Knepley wrote: >> > On Thu, Mar 22, 2018 at 3:44 AM, Lisandro Dalcin >> wrote: >> >> >> >> >> >> ftp://ftp.mcs.anl.gov/pub/petsc/nightlylogs/archive/ >> 2018/03/21/examples

Re: [petsc-dev] We have SSL problems with some sites

2018-03-22 Thread Matthew Knepley
On Thu, Mar 22, 2018 at 6:09 AM, Lawrence Mitchell wrote: > > On 22 Mar 2018, at 09:47, Matthew Knepley wrote: > > > > On Wed, Mar 21, 2018 at 10:00 PM, Satish Balay > wrote: > > Works for me.. > > > > Well, I am not kidding when I say it fails for me. How do I debug this? > > Is the problem th

Re: [petsc-dev] MPI I/O tests failing in master after merging my branch

2018-03-22 Thread Matthew Knepley
On Thu, Mar 22, 2018 at 6:15 AM, Lisandro Dalcin wrote: > On 22 March 2018 at 12:51, Matthew Knepley wrote: > > On Thu, Mar 22, 2018 at 3:44 AM, Lisandro Dalcin > wrote: > >> > >> > >> ftp://ftp.mcs.anl.gov/pub/petsc/nightlylogs/archive/ > 2018/03/21/examples_master_arch-linux-cxx-cmplx-pkgs-64

[petsc-dev] Manual builds fail on master

2018-03-22 Thread Patrick Sanan
The manual and dev manual automated builds are failing on master, but I can't reproduce on any of my local builds and the output is now very terse, so it's not obvious to me how to debug. There were some updates recently to the manual make process, which could be related. I'd move to re-introduce

Re: [petsc-dev] MPI I/O tests failing in master after merging my branch

2018-03-22 Thread Lisandro Dalcin
On 22 March 2018 at 12:51, Matthew Knepley wrote: > On Thu, Mar 22, 2018 at 3:44 AM, Lisandro Dalcin wrote: >> >> >> ftp://ftp.mcs.anl.gov/pub/petsc/nightlylogs/archive/2018/03/21/examples_master_arch-linux-cxx-cmplx-pkgs-64idx_churn.log >> >> The thing is, PETSc does not currently have a way of

Re: [petsc-dev] We have SSL problems with some sites

2018-03-22 Thread Lawrence Mitchell
> On 22 Mar 2018, at 09:47, Matthew Knepley wrote: > > On Wed, Mar 21, 2018 at 10:00 PM, Satish Balay wrote: > Works for me.. > > Well, I am not kidding when I say it fails for me. How do I debug this? Is the problem that urllib.urlretrieve fails for you for SSL connections? Is it this prob

Re: [petsc-dev] MPI I/O tests failing in master after merging my branch

2018-03-22 Thread Matthew Knepley
On Thu, Mar 22, 2018 at 3:44 AM, Lisandro Dalcin wrote: > ftp://ftp.mcs.anl.gov/pub/petsc/nightlylogs/archive/ > 2018/03/21/examples_master_arch-linux-cxx-cmplx-pkgs-64idx_churn.log > > The thing is, PETSc does not currently have a way of mapping a plain C > `int` type to a PETSc datatype. I'm wi

Re: [petsc-dev] We have SSL problems with some sites

2018-03-22 Thread Matthew Knepley
On Wed, Mar 21, 2018 at 10:00 PM, Satish Balay wrote: > Works for me.. > Well, I am not kidding when I say it fails for me. How do I debug this? Matt > Satish > > > > On linux: > > balay@asterix /home/balay/petsc (master=) > $ ./configure --download-gmp PETSC_ARCH=arch-gmp

Re: [petsc-dev] MPI I/O tests failing in master after merging my branch

2018-03-22 Thread Lisandro Dalcin
On 22 March 2018 at 11:10, Lisandro Dalcin wrote: > On 22 March 2018 at 10:44, Lisandro Dalcin wrote: >> >> @Barry or anyone: the only issue for me is to decide on the name, I'll >> call it PETSC_C_INT (and maybe also add PETSC_C_LONG along the way). >> If you don't like and have a better naming

Re: [petsc-dev] MPI I/O tests failing in master after merging my branch

2018-03-22 Thread Lisandro Dalcin
On 22 March 2018 at 10:44, Lisandro Dalcin wrote: > > @Barry or anyone: the only issue for me is to decide on the name, I'll > call it PETSC_C_INT (and maybe also add PETSC_C_LONG along the way). > If you don't like and have a better naming convention to suggest, > please let me know. > Or are we

[petsc-dev] MPI I/O tests failing in master after merging my branch

2018-03-22 Thread Lisandro Dalcin
ftp://ftp.mcs.anl.gov/pub/petsc/nightlylogs/archive/2018/03/21/examples_master_arch-linux-cxx-cmplx-pkgs-64idx_churn.log The thing is, PETSc does not currently have a way of mapping a plain C `int` type to a PETSc datatype. I'm wiling to take the required work to fix this issue. @Barry or anyone: