;/home/mohammad/soft/petsc-3.1-p8-debug/config/BuildSystem/config/package.py",
> line 456, in configure
> self.executeTest(self.configureLibrary)
> File
> "/home/mohammad/soft/petsc-3.1-p8-debug/config/BuildSystem/config/base.py",
> line 97, in executeTest
> ret = apply(test, args,kargs)
> File
> "/home/mohammad/soft/petsc-3.1-p8-debug/config/BuildSystem/config/package.py",
> line 395, in configureLibrary
> for location, directory, lib, incl in self.generateGuesses():
> File
> "/home/mohammad/soft/petsc-3.1-p8-debug/config/BuildSystem/config/package.py",
> line 210, in generateGuesses
> raise RuntimeError('Downloaded '+self.package+' could not be used.
> Please check install in '+d+'\n')
>
--
What most experimenters take for granted before they begin their experiments
is infinitely more interesting than any results to which their experiments
lead.
-- Norbert Wiener
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tten in C++). I'd
> like to link PETSc w/my application but I'm not sure how to do this.
> >
> > Suggestions?
> >
> > Thanks,
> > Matt
>
>
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Hi,
I have read in the user-manual that parallel sparse matrices are stored in the
manner that the first n1 rows are stored on the process with rank 0 and the
next n2 rows on the process with rank 1 and so on. My question is now, is it
possible to store for example the rows 0 to 24 and 50 to 7
/pipermail/petsc-users/attachments/20110727/97e44746/attachment.htm>
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Try running with -eps_gen_hermitian (since ex7 does not assume that the problem
is symmetric).
Jose
El 27/07/2011, a las 12:51, John Chludzinski escribi?:
> I let the SLEPc code run for ~45 min. when it terminated with the same values
> I was getting using DSYGV in LAPACK.
>
> If I write cod
L:
<http://lists.mcs.anl.gov/pipermail/petsc-users/attachments/20110727/9312e4e9/attachment.htm>
>
>> Barry
>>
>> On Jul 26, 2011, at 4:32 PM, Matt Bockman wrote:
>>
>> > Has anyone gotten PETSc to work w/Eclipse? Eclipse nicely generates all
>> my makefiles for me for my current project (which is written in C++). I'd
>> like to link PETSc w/my application but I'm not sure how to do this.
>> >
>> > Suggestions?
>> >
>> > Thanks,
>> > Matt
>>
>>
>
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t;>> \end{itemize}
>>>
>>> We'd love to have someone figure out how to do it right and include that
>>> information.
>>>
>>> Barry
>>>
>>> On Jul 26, 2011, at 4:32 PM, Matt Bockman wrote:
>>>
>>> > Has anyone gotten PETSc to work w/Eclipse? Eclipse nicely generates all
>>> my makefiles for me for my current project (which is written in C++). I'd
>>> like to link PETSc w/my application but I'm not sure how to do this.
>>> >
>>> > Suggestions?
>>> >
>>> > Thanks,
>>> > Matt
>>>
>>>
>>
>
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ters take for granted before they begin their
> experiments is infinitely more interesting than any results to which their
> experiments lead.
> -- Norbert Wiener
>
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e 2 matrices I thus created
> with SLEPc ex7 (generalized eigenvalue problem) it never terminates, using:
> >
> > ./ex7.exe -f1 k.dat -f2 m.dat -eps_type lapack -eps_smallest_real
> >
> > Am I creating the proper PETSc binary (canonical) format for my 2
> matrices?
> >
> > ---John
> >
> >
> >
>
>
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pse does not try to compile
>>>> PETSc with the project.
>>>> \end{itemize}
>>>>
>>>> We'd love to have someone figure out how to do it right and include that
>>>> information.
>>>>
>>>> Barry
>>>>
>>>> On Jul 26, 2011, at 4:32 PM, Matt Bockman wrote:
>>>>
>>>> > Has anyone gotten PETSc to work w/Eclipse? Eclipse nicely generates
>>>> all my makefiles for me for my current project (which is written in C++).
>>>> I'd like to link PETSc w/my application but I'm not sure how to do this.
>>>> >
>>>> > Suggestions?
>>>> >
>>>> > Thanks,
>>>> > Matt
>>>>
>>>>
>>>
>>
>
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Dear Hong,
thank you very much for your time. Can you tell me when should
KSPSetFromOptions(ksp) be called?
well, libMesh has a class called "petsc_linear_solver", in its original
code KSPSetFromOptions(ksp) is called while the object is created. I
couldn't get any output, when I run the progr
d now be build.
>>>>> \item Right-click on the PETSc symlink in the project explorer, and
>>>>> choose "Exclude from build..." to make sure Eclipse does not try to
>>>>> compile
>>>>> PETSc with the project.
>>>>> \end{itemize}
>>>>>
>>>>> We'd love to have someone figure out how to do it right and include
>>>>> that information.
>>>>>
>>>>> Barry
>>>>>
>>>>> On Jul 26, 2011, at 4:32 PM, Matt Bockman wrote:
>>>>>
>>>>> > Has anyone gotten PETSc to work w/Eclipse? Eclipse nicely generates
>>>>> all my makefiles for me for my current project (which is written in C++).
>>>>> I'd like to link PETSc w/my application but I'm not sure how to do this.
>>>>> >
>>>>> > Suggestions?
>>>>> >
>>>>> > Thanks,
>>>>> > Matt
>>>>>
>>>>>
>>>>
>>>
>>
>
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Don't use "time" to measure performance; instead use -log_summary or
PetscGetTime for the interesting part of the computation. In this case,
computing the residuals will take a lot of time.
Jose
El 27/07/2011, a las 19:28, John Chludzinski escribi?:
> $ time ./ex7.exe -f1 k.dat -f2 m.dat -eps
item Refresh the project explorer in Eclipse, so the new symlink is
>>>>>> followed.
>>>>>> \item Right-click on the project in the project explorer, and choose
>>>>>> "Index -> Rebuild". The index should now be build.
>>>>>> \item Right-click on the PETSc symlink in the project explorer, and
>>>>>> choose "Exclude from build..." to make sure Eclipse does not try to
>>>>>> compile
>>>>>> PETSc with the project.
>>>>>> \end{itemize}
>>>>>>
>>>>>> We'd love to have someone figure out how to do it right and include
>>>>>> that information.
>>>>>>
>>>>>> Barry
>>>>>>
>>>>>> On Jul 26, 2011, at 4:32 PM, Matt Bockman wrote:
>>>>>>
>>>>>> > Has anyone gotten PETSc to work w/Eclipse? Eclipse nicely generates
>>>>>> all my makefiles for me for my current project (which is written in C++).
>>>>>> I'd like to link PETSc w/my application but I'm not sure how to do this.
>>>>>> >
>>>>>> > Suggestions?
>>>>>> >
>>>>>> > Thanks,
>>>>>> > Matt
>>>>>>
>>>>>>
>>>>>
>>>>
>>>
>>
>
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e are attached. Could you please take a look
and give me some suggestions.
best,
Alan
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-
use:
make getincludedirs
Satish
On Wed, 27 Jul 2011, Mohammad Mirzadeh wrote:
> I applogize for the mistake; Include files are actually located
> in $PETSC_DIR/include
>
> On Wed, Jul 27, 2011 at 11:18 AM, Mohammad Mirzadeh gmail.com>wrote:
>
> > Ok then. Now I don't have enough experience wi
; gcc: ex29.o: No such file or directory
> make: [ex29] Error 1 (ignored)
>
> The program and modified makefile are attached. Could you please take a
> look and give me some suggestions.
>
> best,
> Alan
>
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gt; >>>>>>
> > >>>>>> A PETSc user has provided the following steps to build an Eclipse
> > >>>>>> index for PETSc that can be used with their own code without
> compiling PETSc
> > >>>>>> source into their project.
> > >>>>>> \begin{itemize}
> > >>>>>> \item In the user project source directory, create a symlink to
> the
> > >>>>>> petsc/src directory.
> > >>>>>> \item Refresh the project explorer in Eclipse, so the new symlink
> is
> > >>>>>> followed.
> > >>>>>> \item Right-click on the project in the project explorer, and
> choose
> > >>>>>> "Index -> Rebuild". The index should now be build.
> > >>>>>> \item Right-click on the PETSc symlink in the project explorer,
> and
> > >>>>>> choose "Exclude from build..." to make sure Eclipse does not try
> to compile
> > >>>>>> PETSc with the project.
> > >>>>>> \end{itemize}
> > >>>>>>
> > >>>>>> We'd love to have someone figure out how to do it right and
> include
> > >>>>>> that information.
> > >>>>>>
> > >>>>>> Barry
> > >>>>>>
> > >>>>>> On Jul 26, 2011, at 4:32 PM, Matt Bockman wrote:
> > >>>>>>
> > >>>>>> > Has anyone gotten PETSc to work w/Eclipse? Eclipse nicely
> generates
> > >>>>>> all my makefiles for me for my current project (which is written
> in C++).
> > >>>>>> I'd like to link PETSc w/my application but I'm not sure how to do
> this.
> > >>>>>> >
> > >>>>>> > Suggestions?
> > >>>>>> >
> > >>>>>> > Thanks,
> > >>>>>> > Matt
> > >>>>>>
> > >>>>>>
> > >>>>>
> > >>>>
> > >>>
> > >>
> > >
> >
>
>
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ake: [ex29] Error 1 (ignored)
>>
>> The program and modified makefile are attached. Could you please take a
>> look and give me some suggestions.
>>
>> best,
>> Alan
>>
>
>
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-- PETSc Performance
Summary: --
./ex7 on a arch-cygw named LIZZYB with 1 processor, by John Wed Jul 27
15:47:39 2011
Using Petsc Release Version 3.1.0, Patch 7, Mon Dec 20 14:26:37 CST 2010
>>
/usr/lib/x86_64-linux-gnu/gcc/x86_64-linux-gnu/4.5.2/../../../gcrt1.o: In
function `_start':
(.text+0x20): undefined reference to `main'
/tmp/ccEthkOE.o: In function `solveMatrix':
/home/mdbockman/Documents/Research/codes/quadrilateral_FEM/quad_FEM_svn_local/quad_FEM_svn/Debug/../SparseMatr
etsc-dev at mcs.anl.gov}.
>> > >>>>>>
>> > >>>>>> To make PETSc an Eclipse package
>> > >>>>>> \begin{itemize}
>> > >>>>>> \item Install the Mecurial plugin for Eclipse and then import the
>> > >>>>>> PETSc repository to Eclipse.
>> > >>>>>> \item elected New->Convert to C/C++ project and selected shared
>> > >>>>>> library. After this point you can perform searchs in the code.
>> > >>>>>> \end{itemize}
>> > >>>>>>
>> > >>>>>> A PETSc user has provided the following steps to build an
>> Eclipse
>> > >>>>>> index for PETSc that can be used with their own code without
>> compiling PETSc
>> > >>>>>> source into their project.
>> > >>>>>> \begin{itemize}
>> > >>>>>> \item In the user project source directory, create a symlink to
>> the
>> > >>>>>> petsc/src directory.
>> > >>>>>> \item Refresh the project explorer in Eclipse, so the new symlink
>> is
>> > >>>>>> followed.
>> > >>>>>> \item Right-click on the project in the project explorer, and
>> choose
>> > >>>>>> "Index -> Rebuild". The index should now be build.
>> > >>>>>> \item Right-click on the PETSc symlink in the project explorer,
>> and
>> > >>>>>> choose "Exclude from build..." to make sure Eclipse does not try
>> to compile
>> > >>>>>> PETSc with the project.
>> > >>>>>> \end{itemize}
>> > >>>>>>
>> > >>>>>> We'd love to have someone figure out how to do it right and
>> include
>> > >>>>>> that information.
>> > >>>>>>
>> > >>>>>> Barry
>> > >>>>>>
>> > >>>>>> On Jul 26, 2011, at 4:32 PM, Matt Bockman wrote:
>> > >>>>>>
>> > >>>>>> > Has anyone gotten PETSc to work w/Eclipse? Eclipse nicely
>> generates
>> > >>>>>> all my makefiles for me for my current project (which is written
>> in C++).
>> > >>>>>> I'd like to link PETSc w/my application but I'm not sure how to
>> do this.
>> > >>>>>> >
>> > >>>>>> > Suggestions?
>> > >>>>>> >
>> > >>>>>> > Thanks,
>> > >>>>>> > Matt
>> > >>>>>>
>> > >>>>>>
>> > >>>>>
>> > >>>>
>> > >>>
>> > >>
>> > >
>> >
>>
>>
>
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Hello,
I would like to use SuperLU as a direct solver for a large size problem running
on multiple processors.
I have write the analytical Jacobian via FormJacobianLocal(), however, I do not
know how to set the direct solver.
Any thoughts?
Thanks a lot!
Rebecca
t; >>>>>> If you are interested in developing code that uses PETSc from
>>> Eclipse
>>> > >>>>>> or developing PETSc in Eclipse and have knowledge of how to do
>>> indexing and
>>> > >>>>>> build libraries in Eclipse please contact us at \
>>> > >>>>>> trl{petsc-dev at mcs.anl.gov}.
>>> > >>>>>>
>>> > >>>>>> To make PETSc an Eclipse package
>>> > >>>>>> \begin{itemize}
>>> > >>>>>> \item Install the Mecurial plugin for Eclipse and then import
>>> the
>>> > >>>>>> PETSc repository to Eclipse.
>>> > >>>>>> \item elected New->Convert to C/C++ project and selected shared
>>> > >>>>>> library. After this point you can perform searchs in the code.
>>> > >>>>>> \end{itemize}
>>> > >>>>>>
>>> > >>>>>> A PETSc user has provided the following steps to build an
>>> Eclipse
>>> > >>>>>> index for PETSc that can be used with their own code without
>>> compiling PETSc
>>> > >>>>>> source into their project.
>>> > >>>>>> \begin{itemize}
>>> > >>>>>> \item In the user project source directory, create a symlink to
>>> the
>>> > >>>>>> petsc/src directory.
>>> > >>>>>> \item Refresh the project explorer in Eclipse, so the new
>>> symlink is
>>> > >>>>>> followed.
>>> > >>>>>> \item Right-click on the project in the project explorer, and
>>> choose
>>> > >>>>>> "Index -> Rebuild". The index should now be build.
>>> > >>>>>> \item Right-click on the PETSc symlink in the project explorer,
>>> and
>>> > >>>>>> choose "Exclude from build..." to make sure Eclipse does not try
>>> to compile
>>> > >>>>>> PETSc with the project.
>>> > >>>>>> \end{itemize}
>>> > >>>>>>
>>> > >>>>>> We'd love to have someone figure out how to do it right and
>>> include
>>> > >>>>>> that information.
>>> > >>>>>>
>>> > >>>>>> Barry
>>> > >>>>>>
>>> > >>>>>> On Jul 26, 2011, at 4:32 PM, Matt Bockman wrote:
>>> > >>>>>>
>>> > >>>>>> > Has anyone gotten PETSc to work w/Eclipse? Eclipse nicely
>>> generates
>>> > >>>>>> all my makefiles for me for my current project (which is written
>>> in C++).
>>> > >>>>>> I'd like to link PETSc w/my application but I'm not sure how to
>>> do this.
>>> > >>>>>> >
>>> > >>>>>> > Suggestions?
>>> > >>>>>> >
>>> > >>>>>> > Thanks,
>>> > >>>>>> > Matt
>>> > >>>>>>
>>> > >>>>>>
>>> > >>>>>
>>> > >>>>
>>> > >>>
>>> > >>
>>> > >
>>> >
>>>
>>>
>>
>
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is infinitely more interesting than any results to which their experiments
lead.
-- Norbert Wiener
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contact us at \
>> > >>>>>> trl{petsc-dev at mcs.anl.gov
>><mailto:trl%7Bpetsc-dev at mcs.**anl.gov> mcs.anl.gov>
>> >}.
>>
>> > >>>>>>
>> > >>>>>> To make PETSc an Eclipse package
>> > >>>>>> \begin{itemize}
>> > >>>>>> \item Install the Mecurial plugin for Eclipse and
>>then import the
>> > >>>>>> PETSc repository to Eclipse.
>> > >>>>>> \item elected New->Convert to C/C++ project and
>>selected shared
>> > >>>>>> library. After this point you can perform searchs
>>in the code.
>> > >>>>>> \end{itemize}
>> > >>>>>>
>> > >>>>>> A PETSc user has provided the following steps to
>>build an Eclipse
>> > >>>>>> index for PETSc that can be used with their own
>>code without compiling PETSc
>> > >>>>>> source into their project.
>> > >>>>>> \begin{itemize}
>> > >>>>>> \item In the user project source directory, create
>>a symlink to the
>> > >>>>>> petsc/src directory.
>> > >>>>>> \item Refresh the project explorer in Eclipse, so
>>the new symlink is
>> > >>>>>> followed.
>> > >>>>>> \item Right-click on the project in the project
>>explorer, and choose
>> > >>>>>> "Index -> Rebuild". The index should now be build.
>> > >>>>>> \item Right-click on the PETSc symlink in the
>>project explorer, and
>> > >>>>>> choose "Exclude from build..." to make sure
>>Eclipse does not try to compile
>> > >>>>>> PETSc with the project.
>> > >>>>>> \end{itemize}
>> > >>>>>>
>> > >>>>>> We'd love to have someone figure out how to do it
>>right and include
>> > >>>>>> that information.
>> > >>>>>>
>> > >>>>>> Barry
>> > >>>>>>
>> > >>>>>> On Jul 26, 2011, at 4:32 PM, Matt Bockman wrote:
>> > >>>>>>
>> > >>>>>> > Has anyone gotten PETSc to work w/Eclipse?
>>Eclipse nicely generates
>> > >>>>>> all my makefiles for me for my current project
>>(which is written in C++).
>> > >>>>>> I'd like to link PETSc w/my application but I'm
>>not sure how to do this.
>> > >>>>>> >
>> > >>>>>> > Suggestions?
>> > >>>>>> >
>> > >>>>>> > Thanks,
>> > >>>>>> > Matt
>> > >>>>>>
>> > >>>>>>
>> > >>>>>
>> > >>>>
>> > >>>
>> > >>
>> > >
>> >
>>
>>
>>
>>
>>
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a tiny bit of information in the PETSc
>>users manual about
>> > >>>>>> Eclipse:
>> > >>>>>>
>> > >>>>>> \section{Eclipse Users} \sindex{eclipse}
>> > >>>>>>
>> > >>>>>> If you are interested in developing code that uses
>>PETSc from Eclipse
>> > >>>>>> or developing PETSc in Eclipse and have knowledge
>>of how to do indexing and
>> > >>>>>> build libraries in Eclipse please contact us at \
>> > >>>>>> trl{petsc-dev at mcs.anl.gov
>><mailto:trl%7Bpetsc-dev at mcs.**anl.gov> mcs.anl.gov>
>> >
>><mailto:trl%7Bpetsc-dev at mcs.__**anl.gov <http://anl.gov>
>><mailto:trl%257Bpetsc-dev at mcs.**anl.gov> mcs.anl.gov>
>> >>}.
>>
>>
>> > >>>>>>
>> > >>>>>> To make PETSc an Eclipse package
>> > >>>>>> \begin{itemize}
>> > >>>>>> \item Install the Mecurial plugin for Eclipse and
>>then import the
>> > >>>>>> PETSc repository to Eclipse.
>> > >>>>>> \item elected New->Convert to C/C++ project and
>>selected shared
>> > >>>>>> library. After this point you can perform searchs
>>in the code.
>> > >>>>>> \end{itemize}
>> > >>>>>>
>> > >>>>>> A PETSc user has provided the following steps to
>>build an Eclipse
>> > >>>>>> index for PETSc that can be used with their own
>>code without compiling PETSc
>> > >>>>>> source into their project.
>> > >>>>>> \begin{itemize}
>> > >>>>>> \item In the user project source directory, create
>>a symlink to the
>> > >>>>>> petsc/src directory.
>> > >>>>>> \item Refresh the project explorer in Eclipse, so
>>the new symlink is
>> > >>>>>> followed.
>> > >>>>>> \item Right-click on the project in the project
>>explorer, and choose
>> > >>>>>> "Index -> Rebuild". The index should now be build.
>> > >>>>>> \item Right-click on the PETSc symlink in the
>>project explorer, and
>> > >>>>>> choose "Exclude from build..." to make sure
>>Eclipse does not try to compile
>> > >>>>>> PETSc with the project.
>> > >>>>>> \end{itemize}
>> > >>>>>>
>> > >>>>>> We'd love to have someone figure out how to do it
>>right and include
>> > >>>>>> that information.
>> > >>>>>>
>> > >>>>>> Barry
>> > >>>>>>
>> > >>>>>> On Jul 26, 2011, at 4:32 PM, Matt Bockman wrote:
>> > >>>>>>
>> > >>>>>> > Has anyone gotten PETSc to work w/Eclipse?
>>Eclipse nicely generates
>> > >>>>>> all my makefiles for me for my current project
>>(which is written in C++).
>> > >>>>>> I'd like to link PETSc w/my application but I'm
>>not sure how to do this.
>> > >>>>>> >
>> > >>>>>> > Suggestions?
>> > >>>>>> >
>> > >>>>>> > Thanks,
>> > >>>>>> > Matt
>> > >>>>>>
>> > >>>>>>
>> > >>>>>
>> > >>>>
>> > >>>
>> > >>
>> > >
>> >
>>
>>
>>
>>
>>
>>
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;>>>**
>> wrote:
>>
>>
>> > >>>>>
>> > >>>>>>
>> > >>>>>> There is a tiny bit of information in the PETSc
>>users manual about
>> > >>>>>> Eclipse:
>> > >>>>>>
>> > >>>>>> \section{Eclipse Users} \sindex{eclipse}
>> > >>>>>>
>> > >>>>>> If you are interested in developing code that uses
>>PETSc from Eclipse
>> > >>>>>> or developing PETSc in Eclipse and have knowledge
>>of how to do indexing and
>> > >>>>>> build libraries in Eclipse please contact us at \
>> > >>>>>> trl{petsc-dev at mcs.anl.gov
>><mailto:trl%7Bpetsc-dev at mcs.**anl.gov> mcs.anl.gov>
>> >
>><mailto:trl%7Bpetsc-dev at mcs.__**anl.gov <http://anl.gov>
>><mailto:trl%257Bpetsc-dev at mcs.**anl.gov> mcs.anl.gov>
>> >>
>><mailto:trl%7Bpetsc-dev at mcs.
>><mailto:trl%257Bpetsc-dev at mcs.**>anl.gov <http://anl.gov>
>>
>><mailto:trl%257Bpetsc-dev at mcs.**__anl.gov
>><mailto:trl%25257Bpetsc-dev@**mcs.anl.gov> mcs.anl.gov>
>> >>>}.
>>
>>
>>
>> > >>>>>>
>> > >>>>>> To make PETSc an Eclipse package
>> > >>>>>> \begin{itemize}
>> > >>>>>> \item Install the Mecurial plugin for Eclipse and
>>then import the
>> > >>>>>> PETSc repository to Eclipse.
>> > >>>>>> \item elected New->Convert to C/C++ project and
>>selected shared
>> > >>>>>> library. After this point you can perform searchs
>>in the code.
>> > >>>>>> \end{itemize}
>> > >>>>>>
>> > >>>>>> A PETSc user has provided the following steps to
>>build an Eclipse
>> > >>>>>> index for PETSc that can be used with their own
>>code without compiling PETSc
>> > >>>>>> source into their project.
>> > >>>>>> \begin{itemize}
>> > >>>>>> \item In the user project source directory, create
>>a symlink to the
>> > >>>>>> petsc/src directory.
>> > >>>>>> \item Refresh the project explorer in Eclipse, so
>>the new symlink is
>> > >>>>>> followed.
>> > >>>>>> \item Right-click on the project in the project
>>explorer, and choose
>> > >>>>>> "Index -> Rebuild". The index should now be build.
>> > >>>>>> \item Right-click on the PETSc symlink in the
>>project explorer, and
>> > >>>>>> choose "Exclude from build..." to make sure
>>Eclipse does not try to compile
>> > >>>>>> PETSc with the project.
>> > >>>>>> \end{itemize}
>> > >>>>>>
>> > >>>>>> We'd love to have someone figure out how to do it
>>right and include
>> > >>>>>> that information.
>> > >>>>>>
>> > >>>>>> Barry
>> > >>>>>>
>> > >>>>>> On Jul 26, 2011, at 4:32 PM, Matt Bockman wrote:
>> > >>>>>>
>> > >>>>>> > Has anyone gotten PETSc to work w/Eclipse?
>>Eclipse nicely generates
>> > >>>>>> all my makefiles for me for my current project
>>(which is written in C++).
>> > >>>>>> I'd like to link PETSc w/my application but I'm
>>not sure how to do this.
>> > >>>>>> >
>> > >>>>>> > Suggestions?
>> > >>>>>> >
>> > >>>>>> > Thanks,
>> > >>>>>> > Matt
>> > >>>>>>
>> > >>>>>>
>> > >>>>>
>> > >>>>
>> > >>>
>> > >>
>> > >
>> >
>>
>>
>>
>>
>>
>>
>>
-- next part --
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<mailto:bsmith at mcs.anl.gov <mailto:bsmith at mcs.anl.gov>>
>><mailto:bsmith at mcs.anl.gov <mailto:bsmith at mcs.anl.gov>
>><mailto:bsmith at mcs.anl.gov <mailto:bsmith at mcs.anl.gov>>>
>><mailto:bsmith at mcs.anl.gov <mailto:bsmith at mcs.anl.gov>
>><mailto:bsmith at mcs.anl.gov <mailto:bsmith at mcs.anl.gov>>
>><mailto:bsmith at mcs.anl.gov <mailto:bsmith at mcs.anl.gov>
>><mailto:bsmith at mcs.anl.gov
>><mailto:bsmith at mcs.anl.gov>>>>**>__wrote:
>>
>>
>> > >>>>>
>> > >>>>>>
>> > >>>>>> There is a tiny bit of information in the PETSc
>>users manual about
>> > >>>>>> Eclipse:
>> > >>>>>>
>> > >>>>>> \section{Eclipse Users} \sindex{eclipse}
>> > >>>>>>
>> > >>>>>> If you are interested in developing code that uses
>>PETSc from Eclipse
>> > >>>>>> or developing PETSc in Eclipse and have knowledge
>>of how to do indexing and
>> > >>>>>> build libraries in Eclipse please contact us at \
>> > >>>>>> trl{petsc-dev at mcs.anl.gov
>><mailto:trl%7Bpetsc-dev at mcs.**anl.gov> mcs.anl.gov>
>> >
>><mailto:trl%7Bpetsc-dev at mcs.__**anl.gov <http://anl.gov>
>><mailto:trl%257Bpetsc-dev at mcs.**anl.gov> mcs.anl.gov>
>> >>
>><mailto:trl%7Bpetsc-dev at mcs.
>><mailto:trl%257Bpetsc-dev at mcs.**>anl.gov <http://anl.gov>
>><mailto:trl%257Bpetsc-dev at mcs.**__anl.gov
>><mailto:trl%25257Bpetsc-dev@**mcs.anl.gov> mcs.anl.gov>
>> >>>
>><mailto:trl%7Bpetsc-dev at mcs <mailto:trl%257Bpetsc-dev at mcs>**.
>><mailto:trl%257Bpetsc-dev at mcs
>><mailto:trl%25257Bpetsc-dev@**mcs
>> >.__>anl.gov <http://anl.gov>
>>
>><http://anl.gov>
>>
>><mailto:trl%257Bpetsc-dev at mcs.
>><mailto:trl%25257Bpetsc-dev@**mcs
>> .>anl.gov <http://anl.gov>
>>
>><mailto:trl%25257Bpetsc-dev at __**mcs.anl.gov <http://mcs.anl.gov>
>><mailto:trl%2525257Bpetsc-dev@**mcs.anl.gov> at mcs.anl.gov>
>> >>>>}.
>>
>>
>>
>>
>> > >>>>>>
>> > >>>>>> To make PETSc an Eclipse package
>> > >>>>>> \begin{itemize}
>> > >>>>>> \item Install the Mecurial plugin for Eclipse and
>>then import the
>> > >>>>>> PETSc repository to Eclipse.
>> > >>>>>> \item elected New->Convert to C/C++ project and
>>selected shared
>> > >>>>>> library. After this point you can perform searchs
>>in the code.
>> > >>>>>> \end{itemize}
>> > >>>>>>
>> > >>>>>> A PETSc user has provided the following steps to
>>build an Eclipse
>> > >>>>>> index for PETSc that can be used with their own
>>code without compiling PETSc
>> > >>>>>> source into their project.
>> > >>>>>> \begin{itemize}
>> > >>>>>> \item In the user project source directory, create
>>a symlink to the
>> > >>>>>> petsc/src directory.
>> > >>>>>> \item Refresh the project explorer in Eclipse, so
>>the new symlink is
>> > >>>>>> followed.
>> > >>>>>> \item Right-click on the project in the project
>>explorer, and choose
>> > >>>>>> "Index -> Rebuild". The index should now be build.
>> > >>>>>> \item Right-click on the PETSc symlink in the
>>project explorer, and
>> > >>>>>> choose "Exclude from build..." to make sure
>>Eclipse does not try to compile
>> > >>>>>> PETSc with the project.
>> > >>>>>> \end{itemize}
>> > >>>>>>
>> > >>>>>> We'd love to have someone figure out how to do it
>>right and include
>> > >>>>>> that information.
>> > >>>>>>
>> > >>>>>> Barry
>> > >>>>>>
>> > >>>>>> On Jul 26, 2011, at 4:32 PM, Matt Bockman wrote:
>> > >>>>>>
>> > >>>>>> > Has anyone gotten PETSc to work w/Eclipse?
>>Eclipse nicely generates
>> > >>>>>> all my makefiles for me for my current project
>>(which is written in C++).
>> > >>>>>> I'd like to link PETSc w/my application but I'm
>>not sure how to do this.
>> > >>>>>> >
>> > >>>>>> > Suggestions?
>> > >>>>>> >
>> > >>>>>> > Thanks,
>> > >>>>>> > Matt
>> > >>>>>>
>> > >>>>>>
>> > >>>>>
>> > >>>>
>> > >>>
>> > >>
>> > >
>> >
>>
>>
>>
>>
>>
>>
>>
>>
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;and has excellent c/c++
>> > >>>>> support.
>> > >>>>>
>> > >>>>> Mohammad
>> > >>>>>
>> > >>>>>
>> > >>>>> On Tue, Jul 26, 2011 at 7:22 PM, Barry Smith
>>mailto:bsmith at mcs.anl.gov>
>><mailto:bsmith at mcs.anl.gov <mailto:bsmith at mcs.anl.gov>>
>><mailto:bsmith at mcs.anl.gov <mailto:bsmith at mcs.anl.gov>
>><mailto:bsmith at mcs.anl.gov <mailto:bsmith at mcs.anl.gov>>>
>><mailto:bsmith at mcs.anl.gov <mailto:bsmith at mcs.anl.gov>
>><mailto:bsmith at mcs.anl.gov <mailto:bsmith at mcs.anl.gov>>
>><mailto:bsmith at mcs.anl.gov <mailto:bsmith at mcs.anl.gov>
>><mailto:bsmith at mcs.anl.gov <mailto:bsmith at mcs.anl.gov>>>>
>><mailto:bsmith at mcs.anl.gov <mailto:bsmith at mcs.anl.gov>
>><mailto:bsmith at mcs.anl.gov <mailto:bsmith at mcs.anl.gov>>
>><mailto:bsmith at mcs.anl.gov <mailto:bsmith at mcs.anl.gov>
>><mailto:bsmith at mcs.anl.gov <mailto:bsmith at mcs.anl.gov>>>
>><mailto:bsmith at mcs.anl.gov <mailto:bsmith at mcs.anl.gov>
>><mailto:bsmith at mcs.anl.gov <mailto:bsmith at mcs.anl.gov>>
>><mailto:bsmith at mcs.anl.gov <mailto:bsmith at mcs.anl.gov>
>><mailto:bsmith at mcs.anl.gov
>><mailto:bsmith at mcs.anl.gov>>>>**>__>__wrote:
>>
>>
>> > >>>>>
>> > >>>>>>
>> > >>>>>> There is a tiny bit of information in the PETSc
>>users manual about
>> > >>>>>> Eclipse:
>> > >>>>>>
>> > >>>>>> \section{Eclipse Users} \sindex{eclipse}
>> > >>>>>>
>> > >>>>>> If you are interested in developing code that uses
>>PETSc from Eclipse
>> > >>>>>> or developing PETSc in Eclipse and have knowledge
>>of how to do indexing and
>> > >>>>>> build libraries in Eclipse please contact us at \
>> > >>>>>> trl{petsc-dev at mcs.anl.gov
>><mailto:trl%7Bpetsc-dev at mcs.**anl.gov> mcs.anl.gov>
>> >
>><mailto:trl%7Bpetsc-dev at mcs.__**anl.gov <http://anl.gov>
>><mailto:trl%257Bpetsc-dev at mcs.**anl.gov> mcs.anl.gov>
>> >>
>><mailto:trl%7Bpetsc-dev at mcs.
>><mailto:trl%257Bpetsc-dev at mcs.**>anl.gov <http://anl.gov>
>><mailto:trl%257Bpetsc-dev at mcs.**__anl.gov
>><mailto:trl%25257Bpetsc-dev@**mcs.anl.gov> mcs.anl.gov>
>> >>>
>><mailto:trl%7Bpetsc-dev at mcs <mailto:trl%257Bpetsc-dev at mcs>**.
>><mailto:trl%257Bpetsc-dev at mcs
>><mailto:trl%25257Bpetsc-dev@**mcs
>> >.__>anl.gov <http://anl.gov>
>><http://anl.gov>
>><mailto:trl%257Bpetsc-dev at mcs.
>><mailto:trl%25257Bpetsc-dev@**mcs
>> .>anl.gov <http://anl.gov>
>><mailto:trl%25257Bpetsc-dev at __**mcs.anl.gov <http://mcs.anl.gov>
>><mailto:trl%2525257Bpetsc-dev@**mcs.anl.gov> at mcs.anl.gov>
>> >>>>
>><mailto:trl%7Bpetsc-dev at mcs <mailto:trl%257Bpetsc-dev at mcs>
>><mailto:trl%257Bpetsc-dev at mcs
>> <mailto:trl%25257Bpetsc-dev@**mcs
>> >>__.
>>
>><mailto:trl%257Bpetsc-dev at mcs
>> <mailto:trl%25257Bpetsc-dev@**mcs
>> >
>><mailto:trl%25257Bpetsc-dev at __**mcs
>><mailto:trl%2525257Bpetsc-dev@**mcs
>> >>.__>anl.gov
>><http://anl.gov> <http://anl.gov>
>>
>><http://anl.gov>
>>
>><mailto:trl%257Bpetsc-dev at mcs
>> <mailto:trl%25257Bpetsc-dev@**mcs
>> >.
>><mailto:trl%25257Bpetsc-dev at __**mcs
>><mailto:trl%2525257Bpetsc-dev@**mcs
>> >.>anl.gov <http://anl.gov>
>><http://anl.gov>
>>
>><mailto:trl%25257Bpetsc-dev@
>><mailto:trl%2525257Bpetsc-dev@**>mcs.anl.gov <
>> http://mcs.anl.gov>
>>
>><mailto:trl%2525257Bpetsc-dev@**__mcs.anl.gov
>><mailto:trl%252525257Bpetsc-**dev at
>> mcs.anl.gov
>> >>>>>}.
>>
>>
>>
>>
>>
>> > >>>>>>
>> > >>>>>> To make PETSc an Eclipse package
>> > >>>>>> \begin{itemize}
>> > >>>>>> \item Install the Mecurial plugin for Eclipse and
>>then import the
>> > >>>>>> PETSc repository to Eclipse.
>> > >>>>>> \item elected New->Convert to C/C++ project and
>>selected shared
>> > >>>>>> library. After this point you can perform searchs
>>in the code.
>> > >>>>>> \end{itemize}
>> > >>>>>>
>> > >>>>>> A PETSc user has provided the following steps to
>>build an Eclipse
>> > >>>>>> index for PETSc that can be used with their own
>>code without compiling PETSc
>> > >>>>>> source into their project.
>> > >>>>>> \begin{itemize}
>> > >>>>>> \item In the user project source directory, create
>>a symlink to the
>> > >>>>>> petsc/src directory.
>> > >>>>>> \item Refresh the project explorer in Eclipse, so
>>the new symlink is
>> > >>>>>> followed.
>> > >>>>>> \item Right-click on the project in the project
>>explorer, and choose
>> > >>>>>> "Index -> Rebuild". The index should now be build.
>> > >>>>>> \item Right-click on the PETSc symlink in the
>>project explorer, and
>> > >>>>>> choose "Exclude from build..." to make sure
>>Eclipse does not try to compile
>> > >>>>>> PETSc with the project.
>> > >>>>>> \end{itemize}
>> > >>>>>>
>> > >>>>>> We'd love to have someone figure out how to do it
>>right and include
>> > >>>>>> that information.
>> > >>>>>>
>> > >>>>>> Barry
>> > >>>>>>
>> > >>>>>> On Jul 26, 2011, at 4:32 PM, Matt Bockman wrote:
>> > >>>>>>
>> > >>>>>> > Has anyone gotten PETSc to work w/Eclipse?
>>Eclipse nicely generates
>> > >>>>>> all my makefiles for me for my current project
>>(which is written in C++).
>> > >>>>>> I'd like to link PETSc w/my application but I'm
>>not sure how to do this.
>> > >>>>>> >
>> > >>>>>> > Suggestions?
>> > >>>>>> >
>> > >>>>>> > Thanks,
>> > >>>>>> > Matt
>> > >>>>>>
>> > >>>>>>
>> > >>>>>
>> > >>>>
>> > >>>
>> > >>
>> > >
>> >
>>
>>
>>
>>
>>
>>
>>
>>
>>
-- next part --
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:mirzadeh at gmail.com <mailto:mirzadeh at gmail.com>>
>>> <mailto:mirzadeh at gmail.com <mailto:mirzadeh at gmail.com>
>>><mailto:mirzadeh at gmail.com <mailto:mirzadeh at gmail.com>>>
>>><mailto:mirzadeh at gmail.com <mailto:mirzadeh at gmail.com>
>>><mailto:mirzadeh at gmail.com <mailto:mirzadeh at gmail.com>>
>>><mailto:mirzadeh at gmail.com <mailto:mirzadeh at gmail.com>
>>><mailto:mirzadeh at gmail.com <mailto:mirzadeh at gmail.com>>>>
>>><mailto:mirzadeh at gmail.com <mailto:mirzadeh at gmail.com>
>>><mailto:mirzadeh at gmail.com <mailto:mirzadeh at gmail.com>>
>>><mailto:mirzadeh at gmail.com <mailto:mirzadeh at gmail.com>
>>><mailto:mirzadeh at gmail.com <mailto:mirzadeh at gmail.com>>>
>>><mailto:mirzadeh at gmail.com <mailto:mirzadeh at gmail.com>
>>><mailto:mirzadeh at gmail.com <mailto:mirzadeh at gmail.com>>
>>><mailto:mirzadeh at gmail.com <mailto:mirzadeh at gmail.com>
>>><mailto:mirzadeh at gmail.com <mailto:mirzadeh at gmail.com>>>>**>
>>>
>>>
>>> > >>>> > wrote:
>>> > >>>>
>>> > >>>>> Although this is sort of orthogonal to what you do
>>>right now,
>>> > >>>>> I recommend Qt Creator as an alternative IDE to
>>>Eclipse. It links nicely
>>> > >>>>> with PETSc(or any other library for that matter)
>>>and has excellent c/c++
>>> > >>>>> support.
>>> > >>>>>
>>> > >>>>> Mohammad
>>> > >>>>>
>>> > >>>>>
>>> > >>>>> On Tue, Jul 26, 2011 at 7:22 PM, Barry Smith
>>>mailto:bsmith at mcs.anl.gov>
>>><mailto:bsmith at mcs.anl.gov <mailto:bsmith at mcs.anl.gov>>
>>><mailto:bsmith at mcs.anl.gov <mailto:bsmith at mcs.anl.gov>
>>><mailto:bsmith at mcs.anl.gov <mailto:bsmith at mcs.anl.gov>>>
>>><mailto:bsmith at mcs.anl.gov <mailto:bsmith at mcs.anl.gov>
>>><mailto:bsmith at mcs.anl.gov <mailto:bsmith at mcs.anl.gov>>
>>><mailto:bsmith at mcs.anl.gov <mailto:bsmith at mcs.anl.gov>
>>><mailto:bsmith at mcs.anl.gov <mailto:bsmith at mcs.anl.gov>>>>
>>><mailto:bsmith at mcs.anl.gov <mailto:bsmith at mcs.anl.gov>
>>><mailto:bsmith at mcs.anl.gov <mailto:bsmith at mcs.anl.gov>>
>>><mailto:bsmith at mcs.anl.gov <mailto:bsmith at mcs.anl.gov>
>>><mailto:bsmith at mcs.anl.gov <mailto:bsmith at mcs.anl.gov>>>
>>><mailto:bsmith at mcs.anl.gov <mailto:bsmith at mcs.anl.gov>
>>><mailto:bsmith at mcs.anl.gov <mailto:bsmith at mcs.anl.gov>>
>>><mailto:bsmith at mcs.anl.gov <mailto:bsmith at mcs.anl.gov>
>>><mailto:bsmith at mcs.anl.gov
>>><mailto:bsmith at mcs.anl.gov>>>>**>__>__wrote:
>>>
>>>
>>> > >>>>>
>>> > >>>>>>
>>> > >>>>>> There is a tiny bit of information in the PETSc
>>>users manual about
>>> > >>>>>> Eclipse:
>>> > >>>>>>
>>> > >>>>>> \section{Eclipse Users} \sindex{eclipse}
>>> > >>>>>>
>>> > >>>>>> If you are interested in developing code that uses
>>>PETSc from Eclipse
>>> > >>>>>> or developing PETSc in Eclipse and have knowledge
>>>of how to do indexing and
>>> > >>>>>> build libraries in Eclipse please contact us at \
>>> > >>>>>> trl{petsc-dev at mcs.anl.gov
>>><mailto:trl%7Bpetsc-dev at mcs.**anl.gov>> mcs.anl.gov>
>>> >
>>><mailto:trl%7Bpetsc-dev at mcs.__**anl.gov <http://anl.gov>
>>><mailto:trl%257Bpetsc-dev at mcs.**anl.gov>> mcs.anl.gov>
>>> >>
>>><mailto:trl%7Bpetsc-dev at mcs.
>>><mailto:trl%257Bpetsc-dev at mcs.**>anl.gov <http://anl.gov>
>>><mailto:trl%257Bpetsc-dev at mcs.**__anl.gov
>>><mailto:trl%25257Bpetsc-dev@**mcs.anl.gov>> mcs.anl.gov>
>>> >>>
>>><mailto:trl%7Bpetsc-dev at mcs <mailto:trl%257Bpetsc-dev at mcs>**.
>>><mailto:trl%257Bpetsc-dev at mcs
>>><mailto:trl%25257Bpetsc-dev@**mcs
>>> >.__>anl.gov <http://anl.gov>
>>><http://anl.gov>
>>><mailto:trl%257Bpetsc-dev at mcs.
>>><mailto:trl%25257Bpetsc-dev@**mcs
>>> .>anl.gov <http://anl.gov>
>>><mailto:trl%25257Bpetsc-dev at __**mcs.anl.gov <http://mcs.anl.gov>
>>><mailto:trl%2525257Bpetsc-dev@**mcs.anl.gov>> at mcs.anl.gov>
>>> >>>>
>>><mailto:trl%7Bpetsc-dev at mcs <mailto:trl%257Bpetsc-dev at mcs>
>>><mailto:trl%257Bpetsc-dev at mcs
>>> <mailto:trl%25257Bpetsc-dev@**mcs
>>> >>__.
>>>
>>><mailto:trl%257Bpetsc-dev at mcs
>>> <mailto:trl%25257Bpetsc-dev@**mcs
>>> >
>>> <mailto:trl%25257Bpetsc-dev at __**mcs
>>><mailto:trl%2525257Bpetsc-dev@**mcs
>>> >>.__>anl.gov
>>><http://anl.gov> <http://anl.gov>
>>>
>>><http://anl.gov>
>>>
>>><mailto:trl%257Bpetsc-dev at mcs
>>> <mailto:trl%25257Bpetsc-dev@**mcs
>>> >.
>>> <mailto:trl%25257Bpetsc-dev at __**mcs
>>><mailto:trl%2525257Bpetsc-dev@**mcs
>>> >.>anl.gov <http://anl.gov>
>>><http://anl.gov>
>>>
>>><mailto:trl%25257Bpetsc-dev@
>>><mailto:trl%2525257Bpetsc-dev@**>mcs.anl.gov <
>>> http://mcs.anl.gov>
>>>
>>><mailto:trl%2525257Bpetsc-dev@**__mcs.anl.gov
>>><mailto:trl%252525257Bpetsc-**dev at
>>> mcs.anl.gov
>>> >>>>>}.
>>>
>>>
>>>
>>>
>>>
>>> > >>>>>>
>>> > >>>>>> To make PETSc an Eclipse package
>>> > >>>>>> \begin{itemize}
>>> > >>>>>> \item Install the Mecurial plugin for Eclipse and
>>>then import the
>>> > >>>>>> PETSc repository to Eclipse.
>>> > >>>>>> \item elected New->Convert to C/C++ project and
>>>selected shared
>>> > >>>>>> library. After this point you can perform searchs
>>>in the code.
>>> > >>>>>> \end{itemize}
>>> > >>>>>>
>>> > >>>>>> A PETSc user has provided the following steps to
>>>build an Eclipse
>>> > >>>>>> index for PETSc that can be used with their own
>>>code without compiling PETSc
>>> > >>>>>> source into their project.
>>> > >>>>>> \begin{itemize}
>>> > >>>>>> \item In the user project source directory, create
>>>a symlink to the
>>> > >>>>>> petsc/src directory.
>>> > >>>>>> \item Refresh the project explorer in Eclipse, so
>>>the new symlink is
>>> > >>>>>> followed.
>>> > >>>>>> \item Right-click on the project in the project
>>>explorer, and choose
>>> > >>>>>> "Index -> Rebuild". The index should now be build.
>>> > >>>>>> \item Right-click on the PETSc symlink in the
>>>project explorer, and
>>> > >>>>>> choose "Exclude from build..." to make sure
>>>Eclipse does not try to compile
>>> > >>>>>> PETSc with the project.
>>> > >>>>>> \end{itemize}
>>> > >>>>>>
>>> > >>>>>> We'd love to have someone figure out how to do it
>>>right and include
>>> > >>>>>> that information.
>>> > >>>>>>
>>> > >>>>>> Barry
>>> > >>>>>>
>>> > >>>>>> On Jul 26, 2011, at 4:32 PM, Matt Bockman wrote:
>>> > >>>>>>
>>> > >>>>>> > Has anyone gotten PETSc to work w/Eclipse?
>>>Eclipse nicely generates
>>> > >>>>>> all my makefiles for me for my current project
>>>(which is written in C++).
>>> > >>>>>> I'd like to link PETSc w/my application but I'm
>>>not sure how to do this.
>>> > >>>>>> >
>>> > >>>>>> > Suggestions?
>>> > >>>>>> >
>>> > >>>>>> > Thanks,
>>> > >>>>>> > Matt
>>> > >>>>>>
>>> > >>>>>>
>>> > >>>>>
>>> > >>>>
>>> > >>>
>>> > >>
>>> > >
>>> >
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>
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Edit $PETSC_DIR/$PETSC_ARCH/conf/petscvariables and remove all mention of
-lPEPCF90 then run make test again
Barry
On Jul 27, 2011, at 9:56 PM, wrote:
> when i execute "make PETSC_DIR=/home/chengwl/opt/petsc-3.1-p8 test"
>
> ld: cannot find -lPEPCF90
> make[3]: [ex5f] error1 (ig
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