On Thu, Dec 21, 2017 at 3:28 AM, Santiago Andres Triana
wrote:
> There is no mpich install on this cluster... I will talk to the sysadmins
> to see if this is feasible...
>
> On other news, configure was successful by turning off C++, however make
> failed: (attached logs)
>
> ...
> -
> On Dec 20, 2017, at 5:52 PM, Matthew Knepley wrote:
>
> On Wed, Dec 20, 2017 at 6:31 PM, Santiago Andres Triana
> wrote:
> I got a different error now... hope it's a good sign!
>
> hpca-login:~/petsc-3.8.3> ./configure --with-cc=gcc --with-fc=gfortran
> --with-cxx=g++ --with-mpi-include=/
On Wed, Dec 20, 2017 at 6:31 PM, Santiago Andres Triana
wrote:
> I got a different error now... hope it's a good sign!
>
> hpca-login:~/petsc-3.8.3> ./configure --with-cc=gcc --with-fc=gfortran
> --with-cxx=g++ --with-mpi-include=/opt/sgi/mpt/mpt-2.12/include
> --with-mpi-lib="-L/opt/sgi/mpt/mpt-
Hm configure is misbehaving with /usr/lib64/libcpuset.so.1 notation. Try:
./configure --with-cc=gcc --with-fc=gfortran --with-cxx=g++
--with-mpi-include=/opt/sgi/mpt/mpt-2.12/include
--with-mpi-lib="-L/opt/sgi/mpt/mpt-2.12/lib -lmpi -lpthread"
LIBS="/usr/lib64/libcpuset.so.1 /usr/lib64/libbitma
Its strange compiler.
You can try:
./configure --with-cc=gcc --with-fc=gfortran --with-cxx=g++
--with-mpi-include=/opt/sgi/mpt/mpt-2.12/include
--with-mpi-lib="-L/opt/sgi/mpt/mpt-2.12/lib -lmpi -lpthread
/usr/lib64/libcpuset.so.1 /usr/lib64/libbitmask.so.1"
Satish
On Wed, 20 Dec 2017, Santia
This is what I get:
hpca-login:~> mpicc -show
gcc -I/opt/sgi/mpt/mpt-2.12/include -L/opt/sgi/mpt/mpt-2.12/lib -lmpi
-lpthread /usr/lib64/libcpuset.so.1 /usr/lib64/libbitmask.so.1
On Wed, Dec 20, 2017 at 11:59 PM, Satish Balay wrote:
> >>>
> Executing: mpicc -E
> -I/dev/shm/pbs.3111462.hpc-pbs
>>>
Executing: mpicc -E
-I/dev/shm/pbs.3111462.hpc-pbs/petsc-fdYfuH/config.setCompilers
/dev/shm/pbs.3111462.hpc-pbs/petsc-fdYfuH/config.setCompilers/conftest.c
stderr:
gcc: warning: /usr/lib64/libcpuset.so.1: linker input file unused because
linking not done
gcc: warning: /usr/lib64/libbitmas
Dear petsc-users,
I'm trying to install petsc in a cluster using SGI's MPT. The mpicc
compiler is in the search path. The configure command is:
./configure --with-scalar-type=complex --with-mumps=1 --download-mumps
--download-parmetis --download-metis --download-scalapack
However, this leads to
